#!/bin/csh
#PBS -N APE6hr
#PBS -l ncpus=6
#PBS -l walltime=08:00:00
#PBS -j oe
#PBS -o /nobackup2/molod/APE6hr/input/stdout
#PBS -q science@columbia2
#PBS -V


echo 'start'
#----------------------------------------------
set namPBS=APE6hr
set runDir=/nobackup/molod/APE6hr/input
set executable=/nobackup/molod/APE6hr/build/mitgcmuv
#-------------------
cd $runDir

#------
limit stacksize unlimited
module list
module purge
module load modules scsl.1.5.0.0 intel-comp.8.1.024 mpt.1.12.0.0
#------

set its=`egrep 'nIter0' data | sed 's/ nIter0=//'| sed 's/,$//'`

#-------------------

 mpirun -np 6 $executable

#-------------------
#- prepare new submission :
#-------------------
echo 'Copying datetime file to datetime0 - time is: ' `cat datetime`
cp datetime datetime0

set ite=`grep CHECKPOINT STDOUT.0000 | grep ckptA | sed 's/(PID.TID 0000.0001) %CHECKPOINT//' | sed 's/ //g' | sed 's/ckptA//'`
echo 'Ending iteration number '$ite
set nitPick = `/u/molod/bin/add0upto10c $ite`
if ( -f pickup.ckptA.001.001.data ) then
 echo 'file:' pickup.ckptA.001.001.data 'exist'
echo 'Rename pickup files'
   mv pickup.ckptA.001.001.data pickup.$nitPick.001.001.data
   mv pickup.ckptA.002.001.data pickup.$nitPick.002.001.data
   mv pickup.ckptA.003.001.data pickup.$nitPick.003.001.data
   mv pickup.ckptA.004.001.data pickup.$nitPick.004.001.data
   mv pickup.ckptA.005.001.data pickup.$nitPick.005.001.data
   mv pickup.ckptA.006.001.data pickup.$nitPick.006.001.data
   mv pickup_fizhi.ckptA.001.001.data pickup_fizhi.$nitPick.001.001.data
   mv pickup_fizhi.ckptA.002.001.data pickup_fizhi.$nitPick.002.001.data
   mv pickup_fizhi.ckptA.003.001.data pickup_fizhi.$nitPick.003.001.data
   mv pickup_fizhi.ckptA.004.001.data pickup_fizhi.$nitPick.004.001.data
   mv pickup_fizhi.ckptA.005.001.data pickup_fizhi.$nitPick.005.001.data
   mv pickup_fizhi.ckptA.006.001.data pickup_fizhi.$nitPick.006.001.data
   mv pickup_vegtiles.ckptA.001.001.data pickup_vegtiles.$nitPick.001.001.data
   mv pickup_vegtiles.ckptA.002.001.data pickup_vegtiles.$nitPick.002.001.data
   mv pickup_vegtiles.ckptA.003.001.data pickup_vegtiles.$nitPick.003.001.data
   mv pickup_vegtiles.ckptA.004.001.data pickup_vegtiles.$nitPick.004.001.data
   mv pickup_vegtiles.ckptA.005.001.data pickup_vegtiles.$nitPick.005.001.data
   mv pickup_vegtiles.ckptA.006.001.data pickup_vegtiles.$nitPick.006.001.data
   mv pickup_vegtiles.ckptA.007.001.data pickup_vegtiles.$nitPick.007.001.data
echo 'Rename mnc directories'
 mkdir mnc_out_$ite
 mv mnc_out_200511*00*/* mnc_out_$ite
 mv STDOUT.0001 mnc_out_$ite
 /bin/rmdir mnc_out_200511*00*
echo 'Change start iteration number for next run '
 sed "s/ nIter0=$its/ nIter0=$ite/" data > data.tmp
 mv data.tmp data
 sleep 5
 qsub $runDir/runScript.columbia
else
 echo 'file:' pickup.ckptA.001.001.data 'do not exist !'
endif

exit