@string{angl    = {Ann.\ Glaciol.}}
@string{arfm  = {Annu.~Rev.~Fluid Mech.}}
@string{bams  = {Bull.~Am.~Met.~Soc.}}
@string{blm = {Bound.~Layer~Meteorol.}}
@string{climd = {Clim.~Dynamics}}
@string{cch     = {Clim.\ Change}}
@string{cup = {Cambridge University Press}}
@string{dao     = {Dyn.~Atmos.~Oceans}}
@string{dkrz  = {Deutsches Klimarechenzentrum (DKRZ)}}
@string{dnmi  = {The Norwegian Meteorological Institute (DNMI)}}
@string{dsr = {Deep Sea Res.}}
@string{ecmwf = {ECMWF}}
@string{eos     = {Eos~Trans.\ AGU}}
@string{esa = {European Space Agency (ESA)}}
@string{esapub  = {ESA Publications Division, ESTEC, Noordwijk (NL)}}
@string{estec = {European Space Research and Technology Centre (ESTEC)}}
@string{gaos  = {Global Atmos.~Ocean System}}
@string{grl = {Geophys.~Res.~Lett.}}
@string{ieee  = {IEEE Trans.~Geosci. Remote Sensing}}
@string{ifremer = {IFREMER/CERSAT}}
@string{igarss  = {IEEE Press, Piscataway, N.J., USA}}
@string{jam = {J.~Appl.~Meteor.}}
@string{jaot  = {J.~Atmos.~Ocean.~Technol.}}
@string{jas = {J.~Atmos.~Sci.}}
@string{jclim = {J.~Clim.}}
@string{jcp = {J.~Comput.~Phys.}}
@string{jfm = {J.~Fluid Mech.}}
@string{jgr = {J.~Geophys.~Res.}}
@string{jgra = {J.~Geophys.~Res. Atmospheres}}
@string{jgro = {J.~Geophys.~Res. Oceans}}
@string{ijrs  = {Int.~J.~Remote Sensing}}
@string{jms = {J.~Mar.~Sys.}}
@string{jmet = {J.~Meteor.}}
@string{jpo = {J.~Phys.~Oceanogr.}}
@string{mpi = {MPI f\"ur Meteorologie}}
@string{mcp = {Meth. Comput. Phys.}}
@string{mwr     = {Mon.~Wea.~Rev.}}
@string{om  = {Ocean Modelling}}
@string{os  = {Ocean Science}}
@string{ocn  = {Oceanography}}
@string{pf = {Physics of Fluids}}
@string{pd = {Physica D.}}
@string{ptrsl   = {{Phil.~Trans.~R.~Soc.~Lond.}}}
@string{rgsp = {{Rev.~Geophys.~Space~Phys.}}}
@string{qjrms   = {{Q.~J.~R.~Meteorol.~Soc.}}}
@string{siscicom= {SIAM J.\ Sci.\ Comput.}}
@string{tel = {Tellus}}


@Article{abernathy:11,
  author =   {Abernathey, R. and J. Marshall and D. Ferreira},
  title =    {The Dependence of {S}outhern {O}cean Meridional Overturning on Wind Stress},
  journal =    jpo,
  year =   2011,
  volume =   41,
  pages =  {2261–2278},
  doi   =  {10.1175/JPO-D-11-023.1}
}

@PhdThesis{adcroft:95,
  author =   {Adcroft, A.},
  title =    {Numerical Algorithms for use in a Dynamical Model of the
                  Ocean},
  school =   {Imperial College, London},
  year =   1995,
  url  = {https://extranet.gfdl.noaa.gov/~aja/papers/adcroft_PhD_1995.pdf}
}

@Article{adcroft:97,
  author =   {Adcroft, A. J. and C. N. Hill and J. Marshall},
  title =    {Representation of topography by shaved cells in a height
                  coordinate ocean model},
  journal =    mwr,
  year =   1997,
  volume =   125,
  pages =  {2293-2315},
  url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
  doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
}

@Article{adcroft:98,
  author =   {Adcroft, A. J. and D. Marshall},
  title =    {How slippery are piecewise-constant coastlines in numerical ocean
                   models?},
  journal =    tel,
  year =   1998,
  volume =   50,
  number = 1,
  pages =  {95-108},
}

@Article{adcroft:99,
  author =   {Adcroft, A., and C. Hill and J. Marshall},
  title =    {A new treatment of the Coriolis terms in C-grid models
                  at both high and low resolutions},
  journal =    mwr,
  year =   1999,
  volume =   127,
  pages =  {1928-1936},
  url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
  doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
}

@Article{adcroft:04a,
  author =   {Adcroft, A. and J.-M. Campin},
  title =    {Re-scaled height coordinates for accurate representation
                  of free-surface flows in ocean circulation models},
  journal =    om,
  year =   2004,
  volume =   7,
  pages =  {269-284},
  doi   =        {10.1016/j.ocemod.2003.09.003},
}

@Article{adcroft:04b,
  author =   {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall},
  title =    {Implementation of an Atmosphere-Ocean General Circulation Model
                  on the Expanded Spherical Cube},
  journal =    mwr,
  year =   2004,
  volume =   132,
  pages =  {2845-2863},
  url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
  doi     =      {10.1175/MWR2823.1},
}

@inproceedings{adcroft:04c,
  author =   {Adcroft, A. and C. Hill and J.-M. Campin, and J. Marshall
                  and P. Heimbach},
  title =    {Overview of the Formulation and Numerics of the {MIT}GCM},
  booktitle =   {Proceedings of the ECMWF seminar series on Numerical Methods,
                 Recent developments in numerical methods for atmosphere and
                 ocean modelling},
  year =   2004,
  pages =  {139-149},
  url   =        {http://mitgcm.org/pdfs/ECMWF2004-Adcroft.pdf},
 publisher =     ecmwf
}

@Article{Albrecht:2011,
AUTHOR = {Albrecht, T. and Martin, M. and Haseloff, M. and Winkelmann, R. and Levermann, A.},
TITLE = {Parameterization for subgrid-scale motion of ice-shelf calving fronts},
JOURNAL = {The Cryosphere},
VOLUME = {5},
YEAR = {2011},
NUMBER = {1},
PAGES = {35--44},
URL = {https://www.the-cryosphere.net/5/35/2011/},
DOI = {10.5194/tc-5-35-2011}
}

@Article{arakawa:77,
  author =   {Arakawa, A. and V. Lamb},
  title =    {Computational design of the basic dynamical processes of the UCLA
                  general circulation model},
  journal =    mcp,
  year =   1977,
  volume =   17,
  pages =  {174-267},
}

@Article{armour:16,
  author =   {Armour, K. C. and J. Marshall and J. R. Scott and A. Donohoe and E. R. Newsom},
  title =    {Southern Ocean warming delayed by circumpolar upwelling and equatorward transport},
  journal =    {Nature Geosci.},
  year =   2016,
  volume =   9,
  pages =  {549–554},
  doi   =  {10.1038/ngeo2731},
}

@Article{asay-davis:16,
 author       = {Asay-Davis, X. S. and S. L. Cornford and G. Durand and B. K. Galton-Fenzi and R. M. Gladstone and G. H. Gudmundsson
                 and T. Hattermann and D. M. Holland and D. Holland and P. R. Holland and D. F. Martin and P. Mathiot and F. Pattyn and H. Seroussi},
 title        = {Experimental design for three interrelated marine ice sheet and ocean model intercomparison projects:
                 {MISMIP} v. 3 ({MISMIP} +), {ISOMIP} v. 2 ({ISOMIP} +) and {MISOMIP} v. 1 ({MISOMIP1})},
 journal      = {Geosci. model dev.},
 volume       = {9},
 year         = {2016},
 number       = {7},
 pages        = {2471--2497},
 doi          = {10.3929/ethz-b-000119139},
}

@article{bachman:17,
  author = {Bachman, S. D. and B. Fox-Kemper and B. Pearson},
  doi = {10.1002/2016JC012265},
  isbn = {2169-9291},
  issn = {21699291},
  journal = {J. Geophys. Res. Ocean.},
  number = {2},
  pages = {1529--1554},
  title = {{A scale-aware subgrid model for quasi-geostrophic turbulence}},
  volume = {122},
  year = {2017}
}

@Article{beckmann:99,
  author =   {Beckmann, A. and H. H. Hellmer and R. Timmermann},
  title =    {A numerical model of the Weddell Sea: Large-scale circulation and water mass distribution},
  journal =    jgro,
  year =   1999,
  volume =   104,
  number =   {C10},
  pages =  {23375–23391},
  doi   =  {10.1029/1999JC900194},
}

@Article{bitz:01,
  author =   {Bitz, C. M. and M. M. Holland and A. J. Weaver and M. Eby},
  title =  {Simulating the ice-thickness distribution in a
                  coupled climate model},
  journal =  jgr,
  year =   2001,
  volume =   106,
  pages =  2441,
  doi =    {10.1029/1999JC000113}
}

@Article{bouillon:13,
  author =	 {Bouillon, S. and T. Fichefet and V. Legat and G. Madec},
  title =	 {The Elastic-Viscous-Plastic Method Revisited},
  journal =	 om,
  volume =	 71,
  number =	 0,
  pages =	 {2--12},
  year =	 2013,
  note =	 {Arctic Ocean},
  doi =		 {10.1016/j.ocemod.2013.05.013},
}

@Article{bryan:63,
  author =	 {Bryan, K.},
  title =	 {A numerical investigation of a nonlinear model of a wind-driven ocean},
  journal =	 jas,
  volume =	 20,
  pages =	 {594-606},
  year =	 1963,
}

@Article{bryan:72,
  author =	 {Bryan, K. and M. D. Cox},
  title =	 {An approximate equation of state for numerical models of ocean circulation},
  journal =	 jpo,
  volume =	 2,
  pages =	 {510--514},
  doi   =        {10.1175/1520-0485(1972)002<0510:AAEOSF>2.0.CO;2},
  year =	 1972,
}

@Article{bryan:75,
  author =	 {Bryan, K. and S. Manabe and R. C. Pacanowski},
  title =	 {A global ocean-atmosphere climate model. Part II. The oceanic circulation},
  journal =	 jpo,
  volume =	 5,
  pages =	 {30--46},
  year =	 1975,
}

@Article{bryan:79,
  author =	 {Bryan, K. and L. J. Lewis},
  title =	 {A water mass model of the world ocean},
  journal =	 jgr,
  volume =	 84,
  number =   {C5},
  pages =	 {2503--2517},
  doi =     {10.1029/JC084iC05p02503},
  year =	 1979,
}

@Article{bryan:84,
  author =   {Bryan, K.},
  title =  {Accelerating the convergence to equilibrium of ocean-climate models},
  journal =  jpo,
  volume =   14,
  number = 4,
  pages =  {666-673},
  year =   1984,
  doi  =  {10.1175/1520-0485(1984)014<0666:ATCTEO>2.0.CO;2},
}

@InCollection{bryan:91,
  author =   {Bryan, K.},
  title =  {Ocean Circulation Models},
  booktitle =  {Strategies for Future Climate Research},
  pages =  {265-286},
  publisher =  {Max-Planck Institut für Meteorologie},
  year =   1991,
  editor =   {M. Latif}
}

<@techreport{burridge:77,
 author       = {Burridge, D. M. and J. Haseler},
 year         = {1977},
 title        = {A Model for medium range weather forecasting: Adiabatic Formulation},
 institution  = {ECMWF},
 type         = {Technical Report},
 number       = {4},
 address      = {Bracknell, U.K.},
 pages        = {196 pp.},
 url          = {https://www.ecmwf.int/sites/default/files/elibrary/1977/8495-model-medium-range-weather-forecasts-adiabatic-formulation.pdf},
}

@Article{cam:04,
  author =   {Campin, J.-M. and A. Adcroft and C. Hill and J. Marshall},
  title =  {Conservation of properties in a free-surface model},
  journal =  om,
  volume =   6,
  pages =  {221--244},
  year =   2004,
  doi  = {10.1016/s1463-5003(03)00009-x},
}

@Article{campin:08,
  author =   {Campin, J.-M. and J. Marshall and D. Ferreira},
  title =  {Sea ice–ocean coupling using a rescaled vertical coordinate z*},
  journal =  om,
  volume =   24,
  number =   {1--2},
  pages =  {1--14},
  doi =    {10.1016/j.ocemod.2008.05.005},
  year =   2008
}

@Article{castro-morales:14,
  author =	 {Castro-Morales, K. and F. Kauker and M. Losch and S. Hendricks and K. Riemann-Campe and R. Gerdes},
  title =	 {Sensitivity of Simulated {A}rctic Sea Ice to Realistic Ice Thickness Distributions and Snow Parameterizations},
  journal =	 jgro,
  year = 	 2014,
  volume = 	 119,
  number = 	 1,
  pages =	 {559--571},
  url =		 {http://dx.doi.org/10.1002/2013JC009342},
  doi =		 {10.1002/2013JC009342},
}

@Article{chou:90,
 author       = {Chou, M-D.},
 year         = {1990},
 title        = {Parameterizations for the absorption of solar radiation
                   by O$_2$ and CO$_2$ with applications to climate studies.},
 journal      = jclim,
 volume       = {3},
 pages        = {209-217}
}

@Article{chou:92,
 author       = {Chou, M-D.},
 year         = {1992},
 title        = {A solar radiation model for use in climate studies.},
 journal      = jas,
 volume       = {49},
 pages        = {762-772}
}

@techreport{chsz:94,
 author       = {Chou, M-D. and M. J. Suarez},
 year         = {1994},
 title        = {An efficient thermal infrared radiation parameterization
for use in general circulation models},
 institution  = {National Aeronautics and Space Administration},
 type         = {NASA Technical Memorandum},
 number       = {104606-Vol 3},
 address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
 note         = {http://www.gmao.nasa.gov/}
}

@Article{christianson:94,
 author       = {Christianson, B.},
 year         = {1994},
 title        = {Reverse accumulation and attractive fixed points},
 journal      = {Optim. Method. Softw.},
 volume       = {9},
 pages        = {307-322},
 doi          = {10.1080/10556789408805572},
}

@Article{clarke:70,
 author       = {Clarke, R. H.},
 year         = {1970},
 title        = {Observational studies in the atmospheric boundary layer.},
 journal      = qjrms,
 volume       = {96},
 pages        = {91-114}
}

@Article{cox:84,
  author =       {Cox, M. D., and K. Bryan},
  title =        {A Numerical Model of the Ventilated Thermocline},
  journal =      jpo,
  year =         1984,
  volume =       14,
  pages =        {674-687},
  doi   =        {10.1175/1520-0485(1984)014<0674:ANMOTV>2.0.CO;2},
}

@Article{cox87,
  author =       {Cox, M. D.},
  title =        {Isopycnal diffusion in a z-coordinate ocean model},
  journal =      {Ocean modelling (unpublished manuscripts)},
  year =         1987,
  volume =       74,
  pages =        {1-5}
}

@book{cushmanroisin:11,
 author   = {Cushman-Roisin, B. and J.-M. Beckers},
 title    = {Introduction to Geophysical Fluid Dynamics, 2nd Edition},
 year   = 2011,
 publisher  = {Academic Press},
 address        = {New York},
 pages    = {875 pp.},
}

@article {danabasoglu:94,
  author = {Danabasoglu, G. and J. C. McWilliams and P. R. Gent},
  title = {The Role of Mesoscale Tracer Transports in the Global Ocean Circulation},
  journal = {Science},
  volume = {264},
  number = {5162},
  pages = {1123--1126},
  year = {1994},
  doi = {10.1126/science.264.5162.1123},
}

@Article{danabasoglu:95,
 author       = {Danabasoglu, G. and J.C. McWilliams,},
 year         = {1995},
 title        = {Sensitivity of the Global Ocean Circulation to Parameterizations of Mesoscale Tracer Transports},
 journal      = jclim,
 volume       = {8},
 number       = 8,
 pages        = {2967–2987},
 doi          = {10.1175/1520-0442(1995)008<2967:SOTGOC>2.0.CO;2},
}

@Article{deacon:37,
 author       = {Deacon, G. E. R.},
 year         = {1937},
 title        = {The hydrology of the southern ocean},
 journal      = {Discovery Rept.},
 volume       = {15},
 pages        = {1-124}
}
@Article{deftow:94,
 author       = {Defries, R. S. and J. R. G. Townshend},
 year         = {1994},
 title        = {{NDVI}-derived Land Cover Classification at Global Scales. },
 journal      = {Int'l J. Rem. Sens.} ,
 volume       = {15},
 pages        = {3567-3586}
}

@Article{deszoeke:02,
 author       = {de Szoeke, R. A., and R. M. Samelson},
 year         = {2002},
 title        = {The duality between the Boussinesq and Non-Boussinesq hydrostatic equations of motion},
 journal      = jpo,
 volume       = {32},
 number       = 8,
 pages        = {2194-2203},
 doi          = {10.1175/1520-0485(2002)032<2194:TDBTBA>2.0.CO;2},
}

@Article{doos:94,
 author       = {Döös, K. and D.J. Webb},
 year         = {1994},
 title        = {The {D}eacon Cell and the Other Meridional Cells of the {S}outhern {O}cean},
 journal      = jpo,
 volume       = {24},
 pages        = { 429–442},
 doi          = {10.1175/1520-0485(1994)024<0429:TDCATO>2.0.CO;2}
}

@Article{dorsell:89,
 author       = {Dorman, J. L. and P. J. Sellers},
 year         = {1989},
 title        = {A global climatology of albedo, roughness length and stomatal resistance for atmospheric general circulation models as represented by the Simple Biosphere model (SiB).},
 journal      = jam,
 volume       = {28},
 pages        = {833-855}
}

@Article {dufour:12,
 author = {C. O. Dufour and J. Le Sommer and J. D. Zika and M. Gehlen and J. C. Orr and P. Mathiot and B. Barnier},
 year = {2012},
 title = {Standing and Transient Eddies in the Response of the Southern Ocean Meridional Overturning to the Southern Annular Mode},
 journal = jclim,
 volume = {25},
 number = 20,
 doi = {10.1175/JCLI-D-11-00309.1},
 pages=  {6958 - 6974},
}

@Article{durran:91,
 author       = {Durrann, D. R.},
 year         = {1991},
 title        = {The Third-Order {A}dams-{B}ashforth Method: An Attractive Alternative to Leapfrog Time Differencing},
 journal      = mwr,
 volume       = {119},
 pages        = {702–720},
 doi          = {10.1175/1520-0493(1991)119<0702:TTOABM>2.0.CO;2},
}

@ARTICLE{dutay:02,
  author      = {J.-C. Dutay and J. L. Bullister and S. C. Doney and J. C. Orr and R. Najjar and K. Caldeira and J.-M. Campin and H. Drange
                 and M. Follows and Y. Gao and N. Gruber and M. W. Hecht and A. Ishida and F. Joos and K. Lindsay and G. Madec and E. Maier-Reimer
                 and J. C. Marshall and R. J. Matear and P. Monfray and A. Mouchet and G.-K. Plattner and J. Sarmiento and R. Schlitzer
                 and R. Slater and I. J. Totterdell and M.-F. Weirig and Y. Yamanaka and A. Yool},
  TITLE       = {Evaluation of ocean model ventilation with CFC-11: comparison of 13 global ocean models},
  JOURNAL     = om,
  YEAR        = 2002,
  VOLUME      = 4,
  NUMBER      = 2,
  PAGES       = {89-120},
  doi         = {10.1016/S1463-5003(01)00013-0}
}

<@techreport{dutkiewicz:05,
 author       = {Dutkiewicz, S. and A. Sokolov and J. Scott and and P. Stone},
 year         = {2005},
 title        = {A three-dimensional ocean-seaice-carbon cycle model and its coupling to a two-dimensional atmospheric model: Uses in climate change studies},
 institution  = {MIT Joint Program of the Science and Policy of Global Change},
 type         = {Technical Report},
 number       = {122},
 address      = {Cambridge, MA, USA},
 pages        = {47 pp.},
 url          = {http://web.mit.edu/globalchange/www/MITJPSPGC_Rpt122.pdf},
}

@ARTICLE{fenty:13,
  author       = {Fenty, I. and P. Heimbach},
  title        = {Coupled sea ice{\textendash}ocean-state estimate in the {Labrador Sea and Baffin Bay}},
  JOURNAL     = jpo,
  YEAR        = 2013,
  VOLUME      = 43,
  NUMBER      = {5},
  PAGES       = {884-904},
  doi         = {10.1175/JPO-D-12-065.1},
}

@inproceedings{ferrari:03,
  author =   {Ferrari, R. and R. A. Pumb},
  title =    {Residual circulation in the ocean},
  booktitle =   {Proceedings of the 13th 'Aha Huliko'a Hawaiian Winter Workshop 13},
  year =   2003,
  pages =  {219-228},
  url   =  {http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.518.57&rep=rep1&type=pdf},
}

@ARTICLE{ferrari:10,
  author       = {Ferrari, R. and S. M. Griffies and A. J. G. Nurser and G. K. Vallis},
  title        = {A boundary-value problem for the parameterized mesoscale eddy transport},
  JOURNAL     = om,
  YEAR        = 2010,
  VOLUME      = 32,
  NUMBER      = {3-4},
  PAGES       = {143-156},
  doi         = {10.1016/j.ocemod.2010.01.004},
}

@ARTICLE{ferrari:08,
  author       = {Ferrari, R. and J. C. McWilliams and V. M. Canuto and M. Dubovikov},
  title        = {Parameterization of Eddy Fluxes near Oceanic Boundaries},
  JOURNAL     = jclim,
  YEAR        = 2008,
  VOLUME      = 21,
  PAGES       = {2770–2789},
  doi         = {10.1175/2007JCLI1510.1},
}

@ARTICLE{ferriera:05,
  author      = {Ferreira, D. and J. Marshall and P. Heimbach},
  TITLE       = {Estimating eddy stresses by fitting dynamics to observations using a residual-mean ocean circulation model and its adjoint},
  JOURNAL     = jpo,
  YEAR        = 2005,
  VOLUME      = 35,
  PAGES       = {1891-1910},
  doi         = {10.1175/JPO2785.1}
}

@ARTICLE{flato:92,
  author      = {Flato, G. M. and W. D. Hibler, III},
  TITLE       = {Modeling pack ice as a cavitating fluid},
  JOURNAL     = jpo,
  YEAR        = 1992,
  VOLUME      = 22,
  PAGES       = {626-651}
}

@techreport{fofonoff:83,
  AUTHOR      = {Fofonoff, P. and R. Millard, Jr.},
  TITLE       = {Algorithms for computation of fundamental properties of seawater},
  type        = {UNESCO Technical Papers in Marine Science},
  number      = 44,
  institution = {UNESCO},
  address     = {Paris},
  YEAR        = {1983},
}

@Article{follows:06,
 author       = {Follows, M. J. and T. Ito and S. Dutkiewicz},
 year         = {2006},
 title        = {On the solution of the carbonate chemistry system in ocean biogeochemistry models},
 journal      = om,
 volume       = {12},
 number       = {3-4},
 doi          = {10.1016/j.ocemod.2005.05.004},
 pages        = {290-301}
}

@Article{for-eta:15,
 author         = {Forget, G. and Campin, J.-M. and Heimbach, P. and Hill, C. N. and Ponte, R. M and Wunsch, C.},
 title          = {{ECCO} version 4: an integrated framework for non-linear inverse modeling and global ocean state estimation},
 journal        = {Geoscientific Model Development},
 volume         = {8},
 year           = {2015},
 number         = {10},
 pages          = {3071--3104},
 url            = {http://www.geosci-model-dev.net/8/3071/2015/},
 doi            = {10.5194/gmd-8-3071-2015}
}

@Article{fuku-etal:14,
  author = {Fukumori, I. and O. Wang and W. Llovel and I. Fenty and G. Forget},
  title = {A near-uniform fluctuation of ocean bottom pressure and sea level across the deep ocean basins of the Arctic Ocean and the Nordic Seas},
  journal = {Progress in Oceanography},
  volume = {134},
  number = {0},
  pages = {152 - 172},
  year = {2015},
  issn = {0079-6611},
  doi = {10.1016/j.pocean.2015.01.013},
  url = {http://www.sciencedirect.com/science/article/pii/S0079661115000245}
}

@Article{gaikwad:24,
  author = {Gaikwad, S. S. and S. H. K. Narayanan and L. Hascoet and J.-M. Campin and H. Pillar and A. Nguyen and J. Huckelheim and P. Hovland and P. Heimbach},
  title = {MITgcm-AD v2: Open source tangent linear and adjoint modeling framework for the oceans and atmosphere enabled by the Automatic Differentiation tool Tapenade},
  journal = {Future Generation Computer Systems},
  volume = {163},
  pages = {107512},
  year = {2025},
  issn = {0167-739X},
  doi = {10.1016/j.future.2024.107512},
  url = {https://www.sciencedirect.com/science/article/pii/S0167739X2400476X}
}

@Article{gas-eta:90,
 author   = {Gaspar, P. and Y. Grégoris and J.-M. Lefevre},
 year   = 1990,
 title    = {A Simple Eddy Kinetic Energy Model for Simulations of the
                   Oceanic Vertical Mixing: Tests at Station Papa and Long-Term
                   Upper Ocean Study Site},
 journal  = jgr,
 volume   = 95,
 number    ={C9},
 pages    = {16,179--16,193},
 doi      = {10.1029/JC095iC09p16179},
 }

@Article{gen-eta:95,
 author   = {Gent, P. R. and J. Willebrand and T. J. McDougall and J. C. McWilliams},
 year   = 1995,
 title    = {Parameterizing eddy-induced tracer transports in ocean circulation models},
 journal  = jpo,
 volume   = {25},
 number   = 4,
 pages    = {463-474},
 doi      = {10.1175/1520-0485(1995)025<0463:PEITTI>2.0.CO;2},
}

@Article{gen-mcw:90,
 author   = {Gent, P. R. and J. C. McWilliams},
 year   = 1990,
 title    = {Isopycnal mixing in ocean circulation models},
 journal  = jpo,
 volume   = {20},
 number   = 1,
 pages    = {150-155},
 doi      = {10.1175/1520-0485(1990)020<0150:IMIOCM>2.0.CO;2},
}

@Article{gent:11,
 author   = {Gent, P. R.},
 year   = 2011,
 title    = {The {G}ent–{M}c{W}illiams parameterization: 20/20 hindsight},
 journal  = om,
 volume   = {39},
 number   = {1-2},
 pages    = {2-9},
 doi      = {10.1016/j.ocemod.2010.08.002},
}

@Article{gkw:91,
  author =       {Gerdes, R. and C. Koberle and J. Willebrand},
  title =        {The influence of numerical advection schemes on the results of ocean general circulation models},
  journal =      climd,
  year =         1991,
  volume =       5,
  number =       4,
  pages =        {211-226},
  doi   =        {10.1007/BF00210006}
}

@Article{giering:98,
  author =       {Giering, R. and T. Kaminski},
  title =        {Recipes for adjoint code construction},
  journal =      {ACM Transactions on Mathematical Software},
  year =         1998,
  volume =       24,
  number =       4,
  pages =        {437-474},
  doi   =        {10.1145/293686.293695}
}

@techreport{giering:99,
 author       = {Giering, R.},
 year         = {1999},
 title        = {Tangent linear and adjoint model compiler. users manual 1.4 (tamc version 5.2)},
 institution  = {Massachusetts Institute of Technology},
 type         = {Technical Report},
 address      = {Cambridge, MA},
 url          = {http:autodiff.com/tamc/tamc_manual.ps.gz},
}

@InCollection{giering:00,
  author =   {Giering, R.},
  title =  {Tangent linear and adjoint biogeochemical models},
  booktitle =  {Inverse Methods in Global Biogeochemical Cycles},
  pages =  {33-48},
  publisher =  {American Geophysical Union},
  address   =  {Washington, D.C.},
  year      =   2000,
  doi       =   {10.1029/GM114p0033},
  editor =   {P. Kasibhatla and M. Heimann and P. Rayner and N. Mahowald and R. G. Prinn and D. E. Hartley}
}

@Article{gil-lem:89,
 author         = {J. C. Gilbert and C. Lemar\'echal},
 year           = 1989,
 title          = {Some numerical experiments with variable-storage
                   quasi-Newton algorithms},
 journal        = {Math. Programming},
 volume         = {45},
 pages          = {407--435},
 doi            = {10.1007/BF01589113},
                  }

@book{gill:82,
 author		= {Gill, A. E.},
 title		= {Atmosphere-Ocean Dynamics},
 year		= 1982,
 publisher	= {Academic Press},
 address        = {New York},
 pages		= {662 pp.},
}

@Article{goldberg:2011,
 author = {Goldberg, D. N.},
 title = {A variationally-derived, depth-integrated approximation to a higher-order glaciologial flow model},
 journal = {J. of Glaciology},
 YEAR = 2011,
 volume = 57,
 issue = 201,
 pages = {157--170}
}

@Article{goldberg_heimbach:2013,
 author = {Goldberg, D. N. and P. Heimbach},
 title = {Parameter and state estimation with a time-dependent adjoint marine ice sheet model},
 journal = {The Cryosphere},
 YEAR = 2013,
 volume = 7,
 pages = {1659--1678}
}

@Article{Goldberg:2015,
 author = {Goldberg, D. N. and P. Heimbach and I. Joughin and B. Smith},
 title = {Committed retreat of Smith, Pope, and Kohler Glaciers over the next 30 years inferred by transient model calibration},
 year = 2015,
 journal = {The Cryosphere},
 volume = 9,
 pages = {2429--2446}
}

@Article{goldberg_openad_fixed:2016,
 author = {Goldberg, D. N. and S. H. K. Narayanan and L. Hascoet and J. Utke},
 title = {An optimized treatment for algorithmic differentiation of an important glaciological fixed-point problem},
 journal = {Geoscientific Model Development},
 YEAR = 2016,
 volume = 9,
 pages = {1891--1904}
}

@Article{griewank:92,
  author =       {Griewank, A.},
  title =        {Achieving logarithmic growth of temporal and spatial complexity in reverse Automatic Differentiation},
  journal =      {Optimization Methods and Software},
  year =         1992,
  volume =       1,
  pages =        {35-54}
}

@book{griewank:08,
 author		= {Griewank, A. and A. Walther},
 title		= {Evaluating Derivatives: Principles and Techniques of Algorithmic Differentiation, Second Edition},
 year		= 2008,
 publisher	= {SIAM},
 address        = {Philadelphia},
 pages		= {426 pp.},
}


@ARTICLE{gr:98,
  author =       {Griffies, S. M.},
  title =        {The {Gent-McWilliams} Skew Flux},
  journal =      jpo,
  year =         1998,
  volume =       28,
  pages =        {831-841},
  doi   =        {10.1175/1520-0485(1998)028<0831:TGMSF>2.0.CO;2},
}

@Article{gretal:98,
  author =       {Griffies, S. M. and A. Gnanadesikan and R. C. Pacanowski and V. Larichev and J. K. Dukowicz and R. D. Smith},
  title =        {Isoneutral diffusion in a z-coordinate ocean model},
  journal =      jpo,
  year =         1998,
  volume =       28,
  pages =        {805-830},
  doi   =        {10.1175/1520-0485(1998)028<0805:IDIAZC>2.0.CO;2},
}

@Article{griffies:00,
  author =       {Griffies, S. M. and R. W. Hallberg},
  title =        {Biharmonic friction with a Smagorinsky-like viscosity for use in
                    large-scale eddy-permitting ocean models},
  journal =      mwr,
  year =         2000,
  volume =       128,
  number =       8,
  pages =        {2935-2946}
}

@Article{grosfeld:97,
  author =       {Grosfeld, K. and R. Gerdes and J. Determann},
  title =        {Thermohaline circulation and interaction between ice shelf cavities and the adjacent open water},
  journal =      jgro,
  year =         1997,
  volume =       102,
  number =       {C7},
  pages =        {15595-15610},
  doi    =       {10.1029/97JC00891},
}

@Article{haney:71,
  author =       {Haney, R. L.},
  title =        {Surface thermal boundary conditions for ocean circulation models},
  journal =      jpo,
  year =         1971,
  volume =       1,
  number =       4,
  pages =        {241-248},
  doi   =        {10.1175/1520-0485(1971)001<0241:STBCFO>2.0.CO;2},
}


@Article{harlow:65,
  author =       {Harlow, F. H. and J. E. Welch},
  title =        {Numerical Calculation of Time-Dependent Viscous Incompressible Flow
                  of Fluid with Free Surface},
  journal =      pf,
  year =         1965,
  volume =       8,
  pages =        {2182-2189}
}

@misc{hascoet:24,
  title={Profiling checkpointing schedules in adjoint ST-AD},
  author={Hascoet, L. and J.-L. Bouchot and S. S. Gaikwad and S. H. K. Narayanan and J. Huckelheim},
  year={2024},
  eprint={2405.15590},
  archivePrefix={arXiv},
  primaryClass={cs.CL},
  doi={10.48550/arXiv.2405.15590}
}

@Article{held-suar:94,
 author		= {Held, I. M. and M. J. Suarez},
 year		= {1994},
 title		= {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models},
 journal	= {Bulletin of the American Meteorological Society},
 volume         = {75(10)},
 pages          = {1825-1830}
}

@article{heim-eta:11,
  title         = {Timescales and regions of the sensitivity of {Atlantic} meridional volume and heat transport: Toward observing system design},
  author        = {Heimbach, P. and C. Wunsch and R. M. Ponte and G. Forget and C. Hill and J. Utke},
  journal       = {Deep Sea Research Part II: Topical Studies in Oceanography},
  volume        = {58},
  number        = {17},
  pages         = {1858--1879},
  year          = {2011},
  publisher     = {Elsevier}
}

@Article{helflab:88,
 author       = {Helfand, H. M. and J. C. Labraga},
 year         = {1988},
 title        = { Design of a non-singular level 2.5 second-order closure
model for the prediction of atmospheric turbulence. },
 journal      = jas,
 volume       = {45},
 pages        = {113-132}
}

@Article{helfschu:95,
 author       = {Helfand, H. M. and S. D. Schubert},
 year         = {1995},
 title        = { Climatology of the
Simulated Great Plains Low-Level Jet and Its contribution to the
Continental Moisture Budget of the United States. },
 journal      = jclim,
 volume       = {8},
 pages        = {784-806}
}

@Article{hellmer:89,
 author       = {Hellmer, H. H., and D. J. Olbers},
 year         = {1989},
 title        = {A two-dimensional model of the thermohaline circulation under an ice shelf},
 journal      = {Antarct. Sci.},
 volume       = {1},
 number       = 4,
 pages        = {325-336},
 doi          = {10.1017/S0954102089000490},
}


@ARTICLE{hibler:79,
  author =   {Hibler, III, W. D.},
  TITLE       = "A Dynamic Thermodynamic Sea Ice Model",
  JOURNAL     = jpo,
  YEAR        = 1979,
  VOLUME      = 9,
  PAGES       = {815-846}
}

@Article{hibler:80,
  author =	 {Hibler, III, W. D.},
  title =	 {Modeling a Variable Thickness Sea Ice Cover},
  journal =	 mwr,
  year =	 1980,
  volume =	 1,
  pages =	 {1943--1973}
}

@InCollection{hibler:84,
  author =	 {Hibler, III, W. D.},
  title =	 {The role of sea ice dynamics in modeling CO2 increases},
  booktitle =	 {Climate processes and climate sensitivity},
  pages =	 {238--253},
  publisher =	 {AGU},
  year =	 1984,
  editor =	 {J. E. Hansen and T. Takahashi},
  volume =	 29,
  series =	 {Geophysical Monograph},
  address =	 {Washington, D.C.}
}

@Article{hibler:87,
  author =   {Hibler, III, W. D. and K. Bryan},
  title =  {A Diagnostic Ice-Ocean Model},
  journal =  jpo,
  year =   1987,
  volume =   17,
  number =   7,
  pages =  {987--1015}
}

@Article{hibler:00,
  author =   {Hibler, W. D. and E. M. Schulson},
  title =  {On Modeling the Anisotropic Failure and Flow of Flawed Sea Ice},
  volume =   105,
  doi =    {10.1029/2000JC900045},
  number =   {C7},
  journal =  jgro,
  year =   2000,
  pages =  {17105--17120},
}

@InCollection{hill:95,
  author =   {Hill, C. and J. Marshall},
  title =  {Application of a Parallel Navier-Stokes Model to
                  Ocean Circulation in Parallel Computational Fluid
                  Dynamics},
  booktitle =  {Implementations and Results Using Parallel
                  Computers},
  pages =  {545-552},
  publisher =  {Elsevier Science B.V.: New York},
  year =   1995,
  editor =   {A. Ecer, J. Periaux, N. Satofuka and S. Taylor}
  }

@InProceedings{hill:99,
  author =   {Hill, C. and A. Adcroft and D. Jamous and J. Marshall},
  title =    {A Strategy for Terascale Climate Modeling},
  booktitle =    {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology},
  year =   1999,
  pages = {406-425},
  publisher =  {World Scientific},
}

@Article{hill:04,
  author = {Hill, C. and V. Bugnion and M. Follows and J. Marshall},
  title = {Evaluating carbon sequestration efficiency in an ocean circulation model by adjoint sensitivity analysis},
  journal = jgro,
  year    = 2004,
  volume = {109},
  number = {C11005},
  doi = {10.1029/2002JC001598},
}

@InProceedings{hoe:99,
  author =   {Hoe, J. C. and C. Hill and A. Adcroft},
  title =    {A personal supercomputer for climate research},
  booktitle =    {SC’99: Proceedings of the 1999 ACM/IEEE Conference on Supercomputing},
  year =   1999,
  doi = {10.1109/SC.1999.10009},
  pages = {59},
  publisher =  {IEEE},
}

@Article{holland:78,
 author   = {Holland, W. R.},
 year   = {1978},
 title    = {The role of mesoscale eddies in the general circulation of the ocean-numerical experiments using a wind-driven quasi-geostrophic model},
 journal  = jpo,
 volume         = {8},
 pages          = {363-392}
}

@Article{holland:99,
 author   = {Holland, D. M and A. Jenkins},
 year   = {1999},
 title    = {Modeling Thermodynamic Ice–Ocean Interactions at the Base of an Ice Shelf},
 journal  = jpo,
 volume         = {29},
 pages          = {1787-1800},
 doi      = {10.1175/1520-0485(1999)029<1787:MTIOIA>2.0.CO;2},
}

@Article{hunke:97,
  author =	 {Hunke, E. C. and J. K. Dukowicz},
  title =	 {An elastic-viscous-plastic model for sea ice dynamics},
  journal =	 jpo,
  year =	 1997,
  volume =	 27,
  pages =	 {1849--1867},
  doi = {10.1175/1520-0485(1997)027<1849:AEVPMF>2.0.CO;2}
}

@Article{hunke:01,
  author =	 {Hunke, E. C.},
  title =	 {Viscous-Plastic Sea Ice Dynamics with the {EVP} Model: Linearization Issues},
  journal =	 jcp,
  year =	 2001,
  volume =	 170,
  pages =	 {18--38},
  doi =		 {10.1006/jcph.2001.6710}
}

@Article{hutchings:04,
  author =	 {Hutchings, J. K. and H. Jasak and S. W. Laxon},
  title =	 {A Strength Implicit Correction Scheme for the Viscous-Plastic Sea Ice Model},
  journal =	 om,
  year =	 2004,
  volume =	 7,
  number =	 {1--2},
  pages =	 {111-133},
  doi =		 {10.1016/S1463-5003(03)00040-4}
}

@techreport{ioc:10,
  author = {IOC, and SCOR and IAPSO},
  year = {2010},
  institution  = {UNESCO (English)},
  address = {Paris, France},
  pages = {196 pp.},
  title = {The International Thermodynamic Equation of Seawater 2010 (TEOS-10): Calculation and Use of Thermodynamic Properties},
  type = {Intergovernmental Oceanographic Commission,  Manuals and Guides},
  number = {56},
  url      =     {http://www.teos-10.org/pubs/TEOS-10_Manual.pdf},
}

@article{ip:91,
  author =   {Ip, C. F. and W. D. Hibler  and G. M. Flato},
  title =	 {On the Effect of Rheology on Seasonal Sea-Ice Simulations},
  volume =	 15,
  journal =	 angl,
  year =	 1991,
  pages =	 {17--25},
}

@Article{jackett:95,
  author =	 {Jackett, D. R. and T. J. McDougall},
  title =	 {Minimal adjustment of hydrographic profiles to achieve static stability},
  journal =	 jaot,
  year =	 1995,
  volume =	 12,
  number =	 {2},
  pages =	 {381-389},
  doi   = {10.1175/1520-0426(1995)012<0381:MAOHPT>2.0.CO;2},
}

@Article{jamart:86,
  author =   {Jamart, B. M., and J. Ozer},
  title =  {Numerical boundary layers and spurious residual flows},
  journal =  jgr,
  year =   1986,
  volume =   91,
  number =   {C9},
  pages =  {10621– 10631},
  doi   = {10.1029/JC091iC09p10621},
}


@Article{jenkins:01,
  author =	 {Jenkins, A. and H. H. Hellmer and D. M. Holland},
  title =	 {The role of meltwater advection in the formulation of
                  conservative boundary conditions at an ice-ocean interface},
  journal =	 jpo,
  year =	 2001,
  volume =	 31,
  pages =	 {285-296},
  doi   =        {10.1175/1520-0485(2001)031<0285:TROMAI>2.0.CO;2},
}

@Article{jiang:99,
  author =   {Jiang, S. and P. H. Stone and P. Malanotte-Rizzoli},
  title =  {An assessment of the Geophysical Fluid Dynamics Laboratory ocean model with coarse resolution: Annual-mean climatology},
  journal =  jgr,
  year =   1999,
  volume =   104,
  number =   {C11},
  pages =  {25623-25645},
  doi   =  {10.1029/1999JC900095}
}

@Article{jordan:18,
  author =   {Jordan, J. R. and P. R. Holland and D. Goldberg and K. Snow and R. Arthern and J.-M. Campin and P. Heimbach and A. Jenkins},
  title =  {Ocean-forced ice-shelf thinning in asynchronously coupled ice-ocean model},
  journal =  jgro,
  year =   2018,
  volume =   123,
  pages =  {864-882},
  doi   =  {10.1002/2017JC013251}
}

@Article{kalnay:96,
  author =   {Kalnay, E. and M. Kanamitsu and R. Kistler and W. Collins and D. Deaven and L. Gandin, and M. Iredell
          and S. Saha and G. White and J. Woollen and Y. Zhu and M. Chelliah and W. Ebisuzaki and W. Higgins
          and J. Janowiak and K. C. Mo and C. Ropelewski and J. Wang and A. Leetmaa and R. Reynolds and R. Jenne and D. Joseph},
  title =  {The NMC/NCAR 40-year reanalysis project},
  journal =  bams,
  year =   1996,
  volume =   77,
  pages =  {437-471},
  doi   =        {10.1175/1520-0477(1996)077<0437:TNYRP>2.0.CO;2},
}

@Article{kimmritz:15,
  author =	 {Kimmritz, M. and  S. Danilov and M. Losch},
  title =	 {On the Convergence of the Modified Elastic-Viscous-Plastic Method of Solving for Sea-Ice Dynamics},
  journal =	 jcp,
  year =	 2015,
  volume =	 296,
  pages =	 {90--100},
  doi =		 {10.1016/j.jcp.2015.04.051}}

@Article{kimmritz:16,
  author =	 {Kimmritz, M. and S. Danilov and M. Losch},
  title =	 {The Adaptive {EVP} Method for Solving the Sea Ice Momentum Equation},
  journal =	 om,
  year =	 2016,
  volume =	 101,
  doi =		 {10.1016/j.ocemod.2016.03.004},
  pages =	 {59--67}}

@Article{klymaklegg10,
  author =   {Klymak, J. M. and S. M. Legg},
  title =  {A simple mixing scheme for models that resolve
                  breaking internal waves},
  journal =  om,
  year =   2010,
  volume =   33,
  pages =  {224--234},
  doi =    {10.1016/j.ocemod.2010.02.005}
}

@Article{kondo:75,
 author       = {Kondo, J.},
 year         = {1975},
 title        = {Air-sea bulk transfer coefficients in diabatic conditions.},
 journal      = blm,
 volume       = {9},
 pages        = {91-112}
}

@article{konig:10,
  title = {Modeling Landfast Sea Ice by Adding Tensile Strength},
  volume = {40},
  issn = {0022-3670},
  url = {http://journals.ametsoc.org/doi/abs/10.1175/2009JPO4105.1},
  doi = {10.1175/2009JPO4105.1},
  number = {1},
  urldate = {2017-05-15},
  journal = jpo,
  author = {König Beatty, Christof and Holland, David M.},
  year = {2010},
  pages = {185--198},
}


@techreport{ks:91,
 author       = {Koster, R. D. and M. J. Suarez},
 year         = {1991},
 title        = {A Simplified Treatment of SiB's Land Surface Albedo Parameterization.},
 institution  = {National Aeronautics and Space Administration},
 type         = {NASA Technical Memorandum},
 number       = {104538},
 address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
 note         = {http://www.gmao.nasa.gov/},
}

@Article{ks:92,
 author       = {Koster, R. D. and M. J. Suarez},
 year         = {1992},
 title        = {Modeling the Land Surface Boundary
in Climate Models as a Composite of Independent Vegetation Stands.},
 journal      = jgr,
 volume       = {97},
 number       = {D3},
 pages        = {2697-2715},
 doi          = {10.1029/91JD01696},
}

@Article{lar-eta:94,
 author   = {Large, W. G. and J. C. McWilliams and S. C. Doney},
 year   = 1994,
 title    = {Oceanic vertical mixing: A review and a model with nonlocal boundary layer parameterization},
 journal  = {Rev.~Geophys.},
 volume   = {32},
 pages    = {363--403},
 doi      = {10.1029/94RG01872},
 }

@Article{lar-eta:97,
 author   = {Large, W. G. and G. Danabasoglu and S. C. Doney and J. C. McWilliams},
 year   = 1997,
 title    = {Sensitivity to surface forcing and boundary layer
                  mixing in a global ocean model: Annual-mean climatology},
 journal  = jpo,
 volume   = {27},
 number   = 11,
 pages    = {2418--2447},
 doi      = {10.1175/1520-0485(1997)027<2418:STSFAB>2.0.CO;2},
 }

@Article{larpond:81,
 author       = {Large, W. G. and S. Pond},
 year         = {1981},
 title        = {Open ocean momentum flux measurements in moderate to strong winds},
 journal      = jpo,
 volume       = {11},
 pages        = {324-336},
 doi          = {10.1175/1520-0485(1981)011<0324:OOMFMI>2.0.CO;2},
}

@Article{leith:68,
 author       = {Leith, C. E.},
 year         = {1968},
 title        = {Large eddy simulation of complex engineering and geophysical flows},
 journal      = pf,
 volume       = {10},
 pages        = {1409-1416}
}

@Article{leith:96,
 author       = {Leith, C. E.},
 year         = {1996},
 title        = {Stochastic models of chaotic systems},
 journal      = pd,
 volume       = {98},
 pages        = {481-491}
}

@Article{lemieux:10,
  author =   {Lemieux, J.-F. and B. Tremblay and J. Sedl{\'a}{\v{c}}ek and P. Tupper and S.
                  Thomas and D. Huard and J.-P. Auclair},
  title =  {Improving the Numerical Convergence of Viscous-Plastic Sea Ice Models with the
            {J}acobian-Free {N}ewton-{K}rylov Method},
  journal =  jcp,
  year =   2010,
  volume =   229,
  pages =  {2840--2852},
  doi =    {10.1016/j.jcp.2009.12.011c}
}

@Article{lemieux:12,
  author =	 {Lemieux, J.-F. and D. Knoll and B. Tremblay and D. M. Holland and M. Losch},
  title =	 {A Comparison of the {J}acobian-free {N}ewton-{K}rylov Method and the {EVP} Model for
            Solving the Sea Ice Momentum Equation with a Viscous-Plastic Formulation: a Serial Algorithm Study},
  journal =	 jcp,
  year =	 2012,
  volume =	 231,
  number =	 17,
  pages =	 {5926--5944},
  doi =		 {10.1016/j.jcp.2012.05.024}}

@Article{lemieux:15,
  author =	 {Jean-Fran{\c{c}}ois Lemieux and L. Bruno Tremblay,
                  Fr{\'e}d{\'e}ric Dupont and Mathieu Plante and
                  Gregory C. Smith and Dany Dumont},
  title =	 {A Basal Stress Parameterization for Modeling
                  Land-Fast Ice},
  journal =	 jgr,
  year =	 2015,
  volume =	 120,
  pages =	 {3157--3173},
  doi =		 {10.1002/2014JC010678}
}

@Article{leppaeranta:83,
  author =	 {Lepp{\"a}ranta, M.},
  title =	 {A Growth Model for Black Ice, Snow Ican and Snow Thickness in Subarctic Basins},
  journal =	 {Nordic Hydrology},
  year =	 1983,
  volume =	 14,
  pages =	 {59--70}
}

@techreport{levitus:94a,
 author       = {Levitus, S. and T. P. Boyer},
 year         = {1994},
 title        = {World Ocean Atlas 1994 Volume 3: Salinity},
 institution  = {National Oceanic and Atmospheric Administration},
 type         = {NOAA Technical Memorandum},
 number       = {NOAA Atlas NESDIS 3},
 address      = {Washington, DC; USA},
}

@techreport{levitus:94b,
 author       = {Levitus, S. and T. P. Boyer},
 year         = {1994},
 title        = {World Ocean Atlas 1994 Volume 3: Temperature},
 institution  = {National Oceanic and Atmospheric Administration},
 type         = {NOAA Technical Memorandum},
 number       = {NOAA Atlas NESDIS 4},
 address      = {Washington, DC; USA},
 url          = {ftp://ftp.nodc.noaa.gov/pub/data.nodc/woa/PUBLICATIONS/WOA94_vol4a.pdf},
}

@Article{lhans:74,
 author       = {Lacis, A. A. and J. E. Hansen},
 year         = {1974},
 title        = { A parameterization for the absorption of solar radiation
in the Earth's atmosphere.  },
 journal      = jas,
 volume       = {31},
 pages        = {118-133}
}

@Article{liu:22,
  author =	 {Yuqing Liu and Martin Losch and Nils Hutter and
                  Longjiang Mu},
  title =	 {A New Parameterization of Coastal Drag to Simulate
                  Landfast Ice in Deep Marginal Seas in the {A}rctic.},
  journal =	 jgr,
  year =	 2022,
  volume =	 127,
  number =	 6,
  pages =	 {e2022JC018413},
  url =		 {https://doi.org/10.1029/2022JC018413},
  doi =		 {10.1029/2022JC018413}
}

@Article{lipscomb:01,
  author =   {Lipscomb, W. H.},
  title =  {Remapping the thickness distribution in sea ice
                  models},
  journal =  jgr,
  year =   2001,
  volume =   106,
  number =   {C7},
  pages =  {13989--14000},
  doi =    {10.1029/2000JC000518}}


@Article{lipscomb:07,
  author =   {Lipscomb, W. H. and E. C. Hunke and W. Maslowski and J. Jakacki},
  title =  {Ridging, strength, and stability in high-resolution
                  sea ice models},
  journal =  jgr,
  year =   2007,
  volume =   112,
  pages =  {1--18},
  doi =    {10.1029/2005JC003355}}


@Article{losch:08,
  author =   {Losch, M.},
  title =  {Modeling ice shelf cavities in a z-coordinate ocean general circulation model},
  journal =  jgro,
  year =   2008,
  volume =   113,
  number =   {C08043},
  pages =  {129--144},
  doi =    {10.1029/2007JC004368}
}

@Article{losch:10,
  author =   {Losch, M. and D. Menemenlis and J.-M. Campin and P. Heimbach and C. Hill},
  title =  {On the formulation of sea-ice models. {P}art 1:
                  Effects of different solver implementations and
                  parameterizations},
  journal =  om,
  year =   2010,
  volume =   33,
  number =   {1--2},
  pages =  {129--144},
  doi =    {10.1016/j.ocemod.2009.12.008}
}

@Article{losch:14,
  author =   {Losch, M. and A. Fuchs and J.-F. Lemieux and A. Vanselow},
  title =  {A Parallel {J}Acobian-Free {N}ewton-{K}rylov Solver
                  for a Coupled Sea Ice-Ocean Model },
  journal =  jcp,
  volume =   {257},
  number =   {A},
  pages =  {901--910},
  year =   {2014},
  doi =    {10.1016/j.jcp.2013.09.026}
}

@Article{Macayeal:89,
        author = {MacAyeal, D. R.},
        title = {Large-scale ice flow over a viscous basal sediment: Theory and application to {I}ce {S}tream {B}, {A}ntarctica},
        year = 1989,
        journal = {Journal of Geophysical Research -- Solid Earth},
        volume = 94,
        pages = {4071--4087}
}

@article{mak:18,
   author = {J. Mak and J. R. Maddison and D. P. Marshall and D. R. Munday},
   title =  {Implementation of a geometrically informed and energetically constrained mesoscale eddy parameterization in an ocean circulation model},
   journal =  jpo,
   volume =   {48},
   number =   {10},
   pages =  {2363--2382},
   year =   {2018},
   doi =    {10.1175/JPO-D-18-0017.1},
}

@article{mak:22,
   author = {J. Mak and D. P. Marshall and G. Madec and J. R. Maddison},
   title =  {Acute sensitivity of global ocean circulation and heat content to eddy energy dissipation time-scale},
   journal =  grl,
   volume =   {49},
   number =   {8},
   pages =  {e2021GL097259},
   year =   {2022},
   doi =    {10.1029/2021GL097259},
}

@Article{manabe:79,
  author =	 {Manabe, S. and K. Bryan and M. J. Spelman},
  title =	 {A Global Ocean-Atmosphere Climate Model with
                  Seasonal Variation for Future Studies of Climate
                  Sensitivity},
  journal =	 dao,
  year =	 1979,
  volume =	 3,
  pages =	 {393--426},
  doi  = {10.1016/0377-0265(79)90021-6}
}


@Article{maro-eta:99,
 author   = {Marotzke, J. and R. Giering and K. Q. Zhang and D. Stammer and C. Hill and T. Lee},
 year   = 1999,
 title    = {Construction of the adjoint MIT ocean general
                  circulation model and application to Atlantic heat
                  transport variability},
 journal  = jgr,
 volume   = {104},
 number    =  {C12},
 pages    = {29,529--29,547},
 doi      = {10.1029/1999JC900236},
      }


@Article{mars-eta:98,
 author   = {Marshall, J. and H. Jones and C. Hill},
 year   = 1998,
 title    = {Efficient ocean modeling using
                  non-hydrostatic algorithms},
 journal  = jms,
 volume   = {18},
 pages    = {115--134},
 url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
 doi            = {10.1016/S0924-7963\%2898\%2900008-6},
      }

@Article{marshall:97a,
  author =   {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
  title =    {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
                 modeling},
  journal =    jgr,
  year =   1997,
  volume =   102,
  number =   {C3},
  pages =  {5733-5752},
  doi   = {10.1029/96JC02776},
  url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
}

@Article{marshall:97b,
  author =   {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
  title =    {A finite-volume, incompressible Navier Stokes model for
                  studies of the ocean on parallel computers},
  journal =    jgr,
  year =   1997,
  volume =   102,
  number =   {C3},
  pages =  {5753-5766},
  doi   = {10.1029/96JC02775},
  url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
}

@Article{marshall:03,
  author =   {Marshall, J. and T. Radko},
  title =    {Residual-Mean Solutions for the Antarctic Circumpolar Current and Its Associated Overturning Circulation},
  journal =    jpo,
  year =   2003,
  volume =   33,
  pages =  {2341–2354},
  doi   = {10.1175/1520-0485(2003)033<2341:RSFTAC>2.0.CO;2},
}

@Article{marshall:04,
  author =   {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White},
  title =    {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms},
  journal =    mwr,
  year =   2004,
  volume =   132,
  pages =  {2882-2894},
  url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
  doi    =       {10.1175/MWR2835.1},
}


@Article{marshall:06,
  author =   {Marshall, J. and E. Shuckburgh and H. Jones and C. Hill},
  title =    {Estimates and implications of surface eddy diffusivity in the southern ocean derived from tracer transport},
  journal =    jpo,
  year =   2006,
  volume =   36,
  pages =  {1806-1821},
  doi   = {10.1175/JPO2949.1},
}

@Article{marshall:12,
  author =   {Marshall, J. and K. Speer},
  title =    {Closure of the meridional overturning circulation through Southern Ocean upwelling},
  journal =    {Nature Geosci.},
  year =   2012,
  volume =   5,
  pages =  {171–180},
  doi   = {10.1038/ngeo1391},
}

@Article{marshall:12b,
  author =   {Marshall, D. P. and J. R. Maddison and P. Berloff},
  title =    {A framework for parameterizing eddy potential vorticity fluxes},
  journal =    jpo,
  year =   2012,
  volume =   42,
  pages =  {539-557},
  doi   = {10.1175/JPO-D-11-048.1},
}


@Article{martin:87,
  author =   {Martin, J. H. and G. A. Knauer and D. M. Karl and W. W. Broenkow},
  title =    {VERTEX: carbon cycling in the northeast Pacific},
  journal =   {Deep Sea Res. Part A. Oceanogr. Res. Papers},
  year =   1987,
  volume =   34,
  number = 2,
  pages =  {267-285},
  doi    =       {10.1016/0198-0149(87)90086-0},
}

@Article{mcdougall:03,
  author =   {McDougall, T. J. and D. R. Jackett and D. G. Wright and R. Feistel},
  title =    {Accurate and computationally efficient algorithms for potential temperature and density of seawater},
  journal =    jaot,
  year =   2003,
  volume =   20,
  number =    5,
  pages =  {730-741},
  doi   = {10.1175/1520-0426(2003)20<730:AACEAF>2.0.CO;2},
}

@techreport{mcdougall:11,
  author = {McDougall, T. and P. M. Barker},
  year = {2011},
  institution  = {SCOR/IAPSO WG127},
  pages = {28 pp.},
  title = {Getting started with TEOS-10 and the Gibbs Seawater (GSW) Oceanographic Toolbox},
  type = {ISBN 978-0-646-55612-5},
  url      =     {http://www.teos-10.org/pubs/gsw/pdf/Getting_Started.pdf},
}

@Article{mckinley:04,
  author =   {McKinley, G. and  M. J. Follows and J. C. Marshall},
  title =    {Mechanisms of air-sea co2 flux variability in the equatorial pacific and the north atlantic},
  journal =   {Global Biogeochem. Cycles},
  year =   2004,
  volume =   18,
  number =  {GB2011},
  doi    =       {10.1029/2003GB002179},
}

@Article{mellor:82,
  author =   {Mellor, G. L. and T. Yamada},
  title =    {Development of a turbulence closure model for geophysical fluid problems},
  journal =   {Rev. Geophys.},
  year =   1982,
  volume =   20,
  number =  4,
  pages =  {851– 875},
  doi    =       {10.1029/RG020i004p00851},
}

@Article{millero:10,
  author =   {Millero, F. J.},
  title =    {History of the equation of state of seawater},
  journal =    ocn,
  year =   2010,
  volume =   23,
  doi    = {10.5670/oceanog.2010.21},
  pages =  {18-33},
}

@Article{mol:09,
 author   = {Molod, A.},
 year   = 2009,
 title    = {Running {GCM} physics and dynamics on different grids:
                   algorithm and tests},
 journal  = tel,
 volume   = {61A},
 pages    = {381--393},
      }

@Article{moorsz:92,
 author       = {Moorthi, S. and M. J. Suarez},
 year         = {1992},
 title        = {  Relaxed Arakawa Schubert: A parameterization of moist
convection for general circulation models.},
 journal      = mwr,
 volume       = {120},
 pages        = {978-1002}
}


@Article{moum96,
  author  = {Moum, J. N.},
  title   = {Energy-containing scales of turbulence in the ocean thermocline},
  journal = jgr,
  year    = 1996,
  volume  = {101},
  number  =  {C6},
  doi     = {10.1029/96JC00507},
  pages   = {14095--14109}
}

@Article{munhoven:13,
AUTHOR = {Munhoven, G.},
TITLE = {Mathematics of the total alkalinity–pH equation -- pathway to robust and universal solution algorithms: the SolveSAPHE package v1.0.1},
JOURNAL = {Geoscientific Model Development},
VOLUME = {6},
YEAR = {2013},
NUMBER = {4},
PAGES = {1367--1388},
URL = {https://www.geosci-model-dev.net/6/1367/2013/},
DOI = {10.5194/gmd-6-1367-2013}
}

@Article{munk:50,
  author  = {Munk, W. H.},
  title   = {On the wind-driven ocean circulation},
  journal = jmet,
  year    = 1950,
  volume  = {7},
  pages   = {79-932}
}

@InCollection{naumann:06,
  author =   {Naumann, U. and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and and M. Strout},
  title =  {Adjoint code by source transformation with {O}pen{AD}/{F}},
  booktitle =  {European Conference on Computational Fluid Dynamics (ECCOMAS CFD 2006)},
  publisher =  {TU Delft},
  address   =  {The Netherlands},
  year      =   2006,
  editor =   {Pieter Wesseling and Jacques P\'eriaux and Eugenio O{\~n}ate},
  note = {Available online at \url{http://proceedings.fyper.com/eccomascfd2006/documents/35.pdf}},
}

@Article{neale:01,
  author  = {Neale,  R. B. and B. J. Hoskins},
  title   = {A standard test for AGCMs including their physical parametrizations: I: The proposal},
  journal = {Atmos. Sci. Letters},
  year    = 2001,
  doi     = {10.1006/asle.2000.0022},
  }

@Article{nikurashin:12,
  author  = {Nikurashin, M. and G. Vallis},
  title   = {A Theory of the Interhemispheric Meridional Overturning Circulation and Associated Stratification},
  journal = jpo,
  year    = 2012,
  volume  = {42},
  doi     = {10.1175/JPO-D-11-0189.1},
  pages   =  {1652–1667}
}

@Article{olbers:04,
 author   = {Olbers, D. and M. Visbeck},
 year   = 2004,
 title    = {A Model of the Zonally Averaged Stratification and Overturning in the Southern Ocean},
 journal  = jpo,
 volume   = {35},
 pages    = {1190–1205},
 doi      = {10.1175/JPO2750.1}
    }

@Article{orl:76,
 author   = {Orlanski, I.},
 year   = 1976,
 title    = {A simple boundary condition for unbounded hyperbolic flows},
 journal  = jcp,
 volume   = {21},
 pages    = {251--269},
    }

@Article{pacanowski:81,
  author =   {Pacanowski, R. C. and S. G. Philander},
  title =  {Parameterization of Vertical Mixing in Numerical Models of Tropical Oceans},
  journal =  jpo,
  year =   1981,
  volume =   11,
  pages =  {1443–1451},
  doi   = {10.1175/1520-0485(1981)011<1443:POVMIN>2.0.CO;2}
}

@Article{pal-rom:97,
 author   = {Paluszkiewicz, T. and R. D. Romea},
 year   = 1997,
 title    = {A one-dimensional model for the parameterization
                  of deep convection in the ocean},
 journal  = dao,
 volume   = {26},
 pages    = {95--130},
      }

@incollection{pano:73,
 author       = {Panofsky, H. A.},
 year         = {1973},
 title        = {Tower Micrometeorology. },
 booktitle    = {Workshop on Micrometeorology},
 editor       = {D. A. Haugen},
 publisher    = {American Meteorological Society}
}

@Article{parkinson:79,
  author =	 {Parkinson, C. L. and W. M. Washington},
  title =	 {A Large-Scale Numerical Model of Sea Ice},
  journal =	 jgr,
  year =	 1979,
  month =	 jan,
  volume =	 84,
  number =	 {C1},
  pages =	 {311--337},
  doi   = {10.1029/JC084iC01p00311}
}

@Article{pawlowicz:13,
  author =   {Pawlowicz, R.},
  title =  {Key Physical Variables in the Ocean: Temperature, Salinity, and Density},
  journal =  {Nature Education Knowledge},
  year =   2013,
  volume =   4,
  number =   4,
  pages =  {13},
  url   = {https://www.nature.com/scitable/knowledge/library/key-physical-variables-in-the-ocean-temperature-102805293/}
}

@book{pedlosky:87,
 author		= {Pedlosky, J.},
 title		= {Geophysical Fluid Dynamics, Second Edition},
 year		= 1987,
 publisher	= {Spring-Verlag},
 address        = {New York},
 pages		= {710 pp.},
}

@book{pedlosky:96,
 author   = {Pedlosky, J.},
 title    = {Ocean Circulation Theory},
 year   = 1996,
 publisher  = {Spring-Verlag},
 address        = {New York},
 pages    = {456 pp.},
}

@book{potter:73,
 author		= {Potter, D.},
 title		= {Computational Physics},
 year		= 1973,
 publisher	= {John Wiley},
 address        = {New York},
 pages		= {304 pp.},
		  }

@Article{prather:86,
  author =	 {Prather, M. J.},
  year =	 {1986},
  title =	 {Numerical advection by conservation of second-order moments},
  journal =	 jgr,
  volume =	 91,
  number =       {D6},
  pages =	 {6671-6681},
  doi  =         {10.1029/JD091iD06p06671}
}


@article{redi1982,
author = {Redi, M. H.},
doi = {10.1175/1520-0485(1982)012<1154:OIMBCR>2.0.CO;2},
isbn = {0022-3670},
issn = {0022-3670},
journal = jpo,
month = {oct},
number = {10},
pages = {1154--1158},
title = {{Oceanic Isopycnal Mixing by Coordinate Rotation}},
volume = {12},
year = {1982}
}

@Article{restrepo:98,
  author =	 {Restrepo, J. and G. Leaf and A. Griewank},
  year =	 {1998},
  title =	 {Circumventing storage limitations in variational data assimilation studies},
  journal =	 {SIAM J. Sci. Comput.},
  volume =	 {19},
  pages =	 {1586-1605}
}

@Article{ringeisen:19,
  author =	 {Ringeisen, D. and M. Losch and L. B. Tremblay and N. Hutter, N.},
  title =	 {Simulating Intersection Angles Between Conjugate Faults in Sea Ice with Different Viscous--Plastic Rheologies},
  journal =	 {The Cryosphere},
  volume =	 13,
  year =	 2019,
  number =	 4,
  pages =	 {1167--1186},
  doi =		 {10.5194/tc-13-1167-2019}
}

@Article{ringeisen:20,
  author =	 {Ringeisen, D. and L. B. Tremblay and M. Losch},
  title =	 {Non-Normal Flow Rules Affect Fracture Angles in Sea Ice Viscous-Plastic Rheologies},
  journal =	 {The Cryosphere Discussions},
  volume =	 2020,
  year =	 2020,
  pages =	 {1--24},
  doi =		 {10.5194/tc-2020-153}
}

@Article{roach:15,
 author         = {Roach, C. J. and H. E. Phillips and N. L. Bindoff and S. R. Rintoul},
 year           = 2015,
 title          = {Detecting and Characterizing Ekman Currents in the Southern Ocean.},
 journal =   jpo,
 volume =  {45},
 pages =   {1205–1223},
 doi    =       {10.1175/JPO-D-14-0115.1},
}

@Incollection{roe:85,
 author         = {Roe, P. L.},
 year           = 1985,
 title          = {Some contributions to the modelling of discontinuous flows},
 booktitle      = {Large-Scale Computations in Fluid Mechanics},
 series         = {Lectures in Applied Mathematics},
 volume         = 22,
 pages          = {163--193},
 editor         = {B.E. Engquist and S. Osher and R.C.J. Somerville},
 publisher      = {American Mathematical Society},
 address        = {Providence, RI},
}

@Article{roquet:15,
 author         = {Roquet, F. and G. Madec and T. J. McDougall and P. M. Barker},
 year           = 2015,
 title          = {Accurate polynomial expressions for the density and specific volume of seawater using the TEOS-10 standard},
 journal =	 om,
 volume =	 {90},
 pages =	 {29-43},
 doi    =       {10.1016/j.ocemod.2015.04.002},
}

@Article{rosen:87,
  author =	 {Rosenfield, J. E. and  M. R. Schoeberl and M. A. Geller},
  year =	 {1987},
  title =	 {A computation of the stratospheric diabatic
                  circulation using an accurate radiative transfer
                  model},
  journal =	 jas,
  volume =	 {44},
  pages =	 {859-876}
}

@Article{rothrock:75,
  author =   {Rothrock, D. A.},
  title =  {The energetics of the plastic deformation of pack
                  ice by ridging},
  journal =  jgr,
  year =   1975,
  volume =   80,
  number =   33,
  pages =  {4514--4519},
  doi =    {10.1029/JC080i033p04514}}

@Article{sadourny:75,
  author =	 {Sadourny, R.},
  year =	 {1975},
  title =	 {The Dynamics of Finite-Difference Models of the Shallow-Water Equations},
  journal =	 jas,
  volume =	 {32},
  doi    =       {10.1175/1520-0469(1975)032<0680:TDOFDM>2.0.CO;2 },
  pages =	 {680-689}
}

@Article{sallee:18,
  author =   {Sallée, J.-B.},
  year =   {2018},
  title =  {Southern Ocean Warming},
  journal =  ocn,
  volume =   {31},
  doi    =   {10.5670/oceanog.2018.215},
  pages =  {52 - 62}
}

@Article{seimgregg94,
  author  = {Seim, H. E. and M. C. Gregg},
  title   = {Detailed observations of a naturally occurring shear instability},
  journal = jgr,
  year    = 1994,
  volume  = 99,
  number  = {C5},
  doi     = {10.1029/94JC00168},
  pages   = {10049--10073},
}


@Article{stevens:90,
  author =   {Stevens, D. P.},
  title =  {On Open Boundary Conditions for Three Dimensional
                  Primitive Equation Ocean Circulation Models},
  journal =  {Geophys. Astrophys. Fl. Dyn.},
  year =   1990,
  volume =   51,
  pages =  {103--133}
}

@Article{semtner:76,
  author =	 {Semtner, Jr., A. J.},
  title =	 {A model for the thermodynamic growth of sea ice in
                  numerical investigations of climate},
  journal =	 jpo,
  year =	 1976,
  volume =	 6,
  pages =	 {379--389}
}

@Article{shapiro:70,
  author  = {Shapiro, R.},
  title   = {Smoothing, filtering, and boundary effects},
  journal = rgsp,
  year    = 1970,
  volume  = {8},
  number  = {2},
  pages   = {359--387}
}

@Article{smag:63,
  author =   {Smagorinsky, J.},
  title   = {General circulation experiments with the primitive equations I: The basic experiment},
  journal = mwr,
  year    = 1963,
  volume  = {91},
  number  = {3},
  pages   = {99--164}
}

@InCollection{smag:93,
  author =   {Smagorinsky, J.},
  title =  {Large eddy simulation of complex engineering and geophysical flows},
  booktitle =  {Evolution of Physical Oceanography},
  pages =  {3-36},
  publisher =  {Cambridge University Press},
  year =   1993,
  editor =   {B. Galperin and S.A. Orszag}
}

@article{smith:19,
  author = {Smith, T. and P. Heimbach},
	title = {Atmospheric origins of Variability in the {South} {Atlantic} Meridional Overturning Circulation},
	volume = {32},
	doi = {10.1175/JCLI-D-18-0311.1},
	number = {5},
	journal = jclim,
	year = 2019,
	pages = {1483--1500},
}

@Article{smolark:89,
  author =   {Smolarkiewicz, P. K.},
  title   = {Comment on "A positive definite advection scheme obtained by nonlinear renormalization of the advective fluxes"},
  journal = mwr,
  year    = 1989,
  volume  = {117},
  number  = {11},
  doi     = {10.1175/1520-0493(1989)117<2626:COPDAS>2.0.CO;2},
  pages   = {2626--2632}
}

@Article{speer:00,
  author =   {Speer, K. S.R. Rintoul and B. Sloyan},
  title   = {The Diabatic {D}eacon Cell},
  journal = jpo,
  year    = 2000,
  volume  = {30},
  doi     = {10.1175/1520-0485(2000)030<3212:TDDC>2.0.CO;2},
  pages   = { 3212–3222}
}

@techreport{stammer:97,
 author       = {Stammer, D. and C. Wunsch and R. Giering and Q. Zhang and J. Marotzke and J. Marshall and C. Hill},
 year         = {1997},
 title        = {The global ocean circulation estimated from {TOPEX}/{POSEIDON} altimetry and a general circulation model},
 institution  = {Massachusetts Institute of Technology},
 type         = {CGCS Report Series},
 number       = {49},
 address      = {Cambridge, MA},
 url         = {https://cgcs.mit.edu/publications/cgcs-report/global-ocean-circulation-estimated-topexposeidon-altimetry-and-mit-general},
}

@Article{stammer:02,
  author =   {Stammer, D. and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C. Hill and J. Marshall},
  title   = {The global ocean circulation and transports during 1992 - 1997, estimated from ocean observations and a general circulation model},
  journal = jgr,
  year    = 2002,
  volume  = {107},
  number  = {C9},
  pages   = {3118},
  doi     = {10.1029/2001JC000888},
}

@article{stewart:17,
author = {K.D. Stewart and A.McC. Hogg and S.M. Griffies and A.P. Heerdegen and M.L. Ward and P. Spence and M.H. England},
year = 2017,
title = {Vertical resolution of baroclinic modes in global ocean models},
journal = om,
volume = {113},
pages = {50-65},
doi = {10.1016/j.ocemod.2017.03.012},
}

@Article{stommel:48,
 author   = {Stommel, H.},
 year   = 1948,
 title    = {The western intensification of wind-driven ocean currents},
 journal  = {Trans. Am. Geophys. Union},
 volume         = {29},
 pages          = {206},
      }

@Article{sudm:88,
 author       = {Sud, Y. C. and A. Molod},
 year         = {1988},
 title        = {  The roles of dry convection, cloud-radiation feedback processes
and the influence of recent improvements in the parameterization of convection in the GLA GCM.  },
 journal      = mwr,
 volume       = {116},
 pages        = {2366-2387}
}

@Article{sverdrup:33,
 author       = {Sverdrup, H. U.},
 year         = {1933},
 title        = {On vertical circulation in the ocean due to the action of the wind with application to conditions within the Antarctic Circumpolar Current},
 journal      = {Discovery Rept.},
 volume       = {7},
 pages        = {141-169}
}

@techreport{taksz:96,
 author       = {Takacs, L. L. and M. J. Suarez},
 year         = {1996},
 title        = {Dynamical aspects of climate simulations Using the GEOS
General Circulation Model},
 institution  = {National Aeronautics and Space Administration},
 type         = {NASA Technical Memorandum},
 number       = {104606 Volume 10},
 address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
 note         = {http://www.gmao.nasa.gov/},
}

@Article{thorndike:75,
  AUTHOR =   {Thorndike, A. S. and D. A. Rothrock and G. A. Maykut and R. Colony},
  YEAR =   1975,
  TITLE =  {The thickness distribution of sea ice},
  JOURNAL =  jgr,
  VOLUME =   80,
  PAGES =  {4501--4513}
}

@Article{thorpe77,
  author  = {Thorpe, S. A.},
  title   = {Turbulence and mixing in a Scottish loch},
  journal = ptrsl,
  year    = 1977,
  volume  = {286},
  pages   = {125--181}
}

@techreport{trenberth:89,
 author       = {Trenberth, K. and J. Olson and W. Large},
 year         = {1989},
 title        = {A global wind stress climatology based on ecmwf analyses},
 institution  = {National Center for Atmospheric Research},
 type         = {NCAR Technical Note},
 number       = {NCAR/TN-338+STR},
 address      = {Boulder, CO},
 doi         = {10.5065/D6ST7MR9}
}

@Article{trenberth:90,
  author  = {Trenberth, K. M. and J. Olson and W. G. Large},
  title   = {The mean annual cycle in Global Ocean wind stress},
  journal = jpo,
  year    = 1990,
  volume  = {20},
  number = {11},
  pages   = {1742-1760},
  doi     = {10.1175/1520-0485(1990)020<1742:TMACIG>2.0.CO;2},
}


@Article{ungermann:17,
  author =   {Ungermann, M. and L.B. Tremblay and T. Martin and M. Losch},
  title =  {Impact of the Ice Strength Formulation on the
                  Performance of a Sea Ice Thickness Distribution
                  Model in the {A}rctic},
  year =   2017,
  journal =  jgr,
  volume =   122,
  number =   3,
  issn =   {2169-9291},
  url =    {http://dx.doi.org/10.1002/2016JC012128},
  doi =    {10.1002/2016JC012128},
  pages =  {2090--2107},
  keywords =   {Sea ice, Modeling, Distribution, cost function,
                  coupled sea ice-ocean model, Arctic, ice strength
                  parameterization, MITgcm, Green's function approach},
}

@Article{utke:08,
 author   = {Utke, J. and U. Naumann and M. Fagan and N. Tallent and M. Strout and P. Heimbach and C. Hill and C. Wunsch},
 year   = 2008,
 title    = {{OpenAD/F}: A modular open-source tool for automatic differentiation of Fortran codes},
 journal  = {ACM Transactions on Mathematical Software (TOMS)},
 volume         = {34},
 number         = 4,
 pages          = {18},
 doi            = {10.1145/1377596.1377598},
      }

@Article{visbeck:97,
  author =   {Visbeck, M. and J. Marshall and T. Haine and M. Spall},
  title =    {Specification of eddy transfer coefficients in coarse-resolution ocean circulation models},
  journal =    jpo,
  year =   1997,
  volume =   27,
  number =   3,
  pages =  {381-402},
  doi   =  {10.1175/1520-0485(1997)027<0381:SOETCI>2.0.CO;2},
}

@book{vallis:17,
 author   = {Vallis, G. K.},
 title    = {Atmospheric and Oceanic Fluid Dynamics: Fundamentals and Large-Scale Circulation, 2nd Edition},
 year   =17,
 publisher  = {Cambridge University Press},
  pages    = {964 pp.},
 doi   = {10.1017/9781107588417}
}

@InProceedings{veronis:75,
  author =   {Veronis, G.},
  title =    {The role of models in tracer studies},
  booktitle =    {Numerical Models of the Ocean Circulation},
  year =   1975,
  pages = {133–146},
  publisher =  {Nat. Acad. of Sci.},
  address = {Washington, D.C.},
  url = {https://books.google.com/books?hl=en&lr=&id=9S8rAAAAYAAJ&oi=fnd&pg=PA133&dq=Veronis,+G.,+1975:+The+role+of+models+in+tracer+studies.+Numerical+Models+of+the+Ocean+Circulation,+Natl.+Acad.+Sci.,+133%E2%80%93146.+&ots=xitpIWzXX3&sig=fXxEToFbFCutn1-7ZbMoY4oDEFE#v=onepage&q&f=false}
}

@Article {viebahn:12,
  author = {J. Viebahn and C. Eden},
  title = {Standing Eddies in the Meridional Overturning Circulation},
  journal = jpo,
  year = {2012},
  volume = {42},
  number = 9,
  doi = {10.1175/JPO-D-11-087.1},
  pages= {1486 - 1508},
}

@Article{wajsowicz:93,
  author =   {Wajsowicz, R.},
  title =    {A consistent formulation of the anisotropic stress tensor for use in
               models of the large-scale ocean circulation},
  journal =    jcp,
  year =   1993,
  volume =   105,
  number =   2,
  pages =  {333-338}
}

@Article{wannink:92,
  author =   {Wanninkhof, R.},
  title =    {Relationship between wind speed and gas exchange over the ocean},
  journal =    jgr,
  year =   1992,
  volume =   97,
  number =   {C5},
  pages =  {7373-7382},
  doi   =  {10.1029/92JC00188}
}

@Article{weaver:01,
  author =   {Weaver, A. and P. Courtier},
  title =    {Correlation modelling on the sphere using a generalized diffusion equation},
  journal =    qjrms,
  year =   2001,
  volume =   127,
  pages =  {1815-1846},
  doi   =  {10.1002/qj.49712757518}
}

@Article{wesson94,
  author  = {Wesson, J. C. and  M. C. Gregg},
  title   = {Mixing at Camarinal Sill in the Strait of Gibraltar},
  journal = qjrms,
  year    = 1994,
  volume  = {99 (C5)},
  pages   = { 9847--9878}
}

@Article{white:95
  author  = {White, A. A. and  R. A. Bromley},
  title   = {Dynamically consistent,  quasi-hydrostatic equations for global models
             with  a complete representation of the Coriolis force},
  journal = qjrms,
  year    = 1995,
  volume  = {121},
  doi     = {10.1002/qj.49712152208},
  pages   = { 399--418}
}

@Article{williams:69,
  author      = {Williams, G. P.},
  title       = {Numerical integration of the three-dimensional Navier Stokes
                 equations for incompressible flow},
  journal     = jfm,
  year        = 1969,
  volume      = 37,
  pages       = {727--750}
}

@Article{winton:00,
  author      = {Winton, M.},
  title       = {A reformulated three-layer sea ice model},
  journal     = jaot,
  year        = 2000,
  volume      = 17,
  pages       = {525--531},
  doi         = {10.1175/1520-0426(2000)017<0525:ARTLSI>2.0.CO;2}
}

@Article{wolfe:14,
  author      = {Wolfe, C. L.},
  title       = {Approximations to the ocean’s residual circulation in arbitrary tracer coordinates},
  journal     = om,
  year        = 2014,
  volume      = 75,
  pages       = {20 - 35},
  doi         = {10.1016/j.ocemod.2013.12.004}
}

@Article{yagkad:74,
 author       = {Yaglom, A. M. and B. A. Kader},
 year         = {1974},
 title        = {Heat and mass transfer between a rough wall and
turbulent fluid flow at high Reynolds and Peclet numbers.  },
 journal      = jfm,
 volume       = {62},
 pages        = {601-623}
}

v@Article{yam:77,
 author       = {Yamada, T.},
 year         = {1977},
 title        = {  A numerical experiment on pollutant dispersion in a horizontally-homogeneous
atmospheric boundary layer.},
 journal      = {Atmos. Environ.},
 volume       = {11},
 pages        = {1015-1024}
}

@Article{yamanaka:97,
 author       = {Yamanaka Y. and E. Tajika},
 year         = {1997},
 title        = {Role of dissolved organic matter in the marine biogeochemical cycle: Studies using an ocean biogeochemical general circulation model},
 journal      = {Global Biogeochem. Cycles},
 volume       = {11},
 number       =   4,
 pages        = {599-612},
 doi          = {10.1029/97GB02301}
}

@Article{zhang:97,
  author =   {Zhang, J. and Hibler, III, W. D.},
  title =    {On an Efficient Numerical Method for Modeling Sea Ice Dynamics},
  journal =    jgr,
  year =   1997,
  volume =   102,
  number =   {C4},
  doi    =   {10.1029/96JC03744},
  pages =  {8691--8702}
}


@Article{zha:98,
  author =	 {Zhang, J. and W. D. Hibler, III and M. Steele and D. A. Rothrock},
  title =	 {Arctic ice-ocean modeling with and without climate restoring},
  journal =	 jpo,
  year =	 1998,
  volume =	 28,
  pages =	 {191--217}
}

@article{zha:05,
  author =   {Zhang, J. and D. A. Rothrock},
  title =	 {Effect of Sea Ice Rheology in Numerical Investigations of Climate},
  volume =	 110,
  doi =		 {10.1029/2004JC002599},
  number =	 {C8},
  journal =	 jgro,
  year =	 2005,
  pages =	 {C08014}
}

@Article{zhouetal:95,
 author       = {Zhou, J. and Y. C. Sud and K.-M. Lau},
 year         = {1995},
 title        = {Impact of Orographically Induced Gravity Wave Drag in the GLA GCM},
 journal      = qjrms,
 volume       = {122},
 pages        = {903-927}
}
