| Directory | File Name | Description |
| ./model/src/ | adams_bashforth2.F | |
| ./model/src/ | adams_bashforth3.F | |
| ./model/src/ | askparam.F | |
| ./pkg/admtlm/ | admtlm_driver.F | |
| ./pkg/admtlm/ | admtlm_dsvd.F | |
| ./pkg/admtlm/ | admtlm_dsvd2model.F | |
| ./pkg/admtlm/ | admtlm_map.F | |
| ./pkg/admtlm/ | admtlm_metric.F | |
| ./pkg/admtlm/ | admtlm_model2dsvd.F | |
| ./pkg/admtlm/ | admtlm_upxx.F | |
| ./pkg/admtlm/ | arpack_debug.h | |
| ./pkg/aim/ | AIM2DYN.h | |
| ./pkg/aim/ | AIM_DIAGS.h | |
| ./pkg/aim/ | AIM_FFIELDS.h | |
| ./pkg/aim/ | AIM_GRID.h | |
| ./pkg/aim/ | AIM_OPTIONS.h | |
| ./pkg/aim/ | AIM_SIZE.h | |
| ./pkg/aim/ | aim_aim2dyn.F | |
| ./pkg/aim/ | aim_aim2dyn_exchanges.F | |
| ./pkg/aim/ | aim_calc_diags.F | |
| ./pkg/aim/ | aim_do_atmos_physics.F | |
| ./pkg/aim/ | aim_dyn2aim.F | |
| ./pkg/aim/ | aim_external_fields_load.F | |
| ./pkg/aim/ | aim_external_forcing.F | |
| ./pkg/aim/ | aim_initialise.F | |
| ./pkg/aim/ | aim_read_physparms.F | |
| ./pkg/aim/ | aim_write_diags.F | |
| ./pkg/aim_compon_interf/ | ATMCPL.h | |
| ./pkg/aim_compon_interf/ | atm_apply_import.F | |
| ./pkg/aim_compon_interf/ | atm_cpl_read_pickup.F | |
| ./pkg/aim_compon_interf/ | atm_export_atmconfig.F | |
| ./pkg/aim_compon_interf/ | atm_export_atmslp.F | |
| ./pkg/aim_compon_interf/ | atm_export_evmpr.F | |
| ./pkg/aim_compon_interf/ | atm_export_heatflux.F | |
| ./pkg/aim_compon_interf/ | atm_export_qshortwave.F | |
| ./pkg/aim_compon_interf/ | atm_export_roenfx.F | |
| ./pkg/aim_compon_interf/ | atm_export_runoff.F | |
| ./pkg/aim_compon_interf/ | atm_export_saltfx.F | |
| ./pkg/aim_compon_interf/ | atm_export_seaice.F | |
| ./pkg/aim_compon_interf/ | atm_export_taux.F | |
| ./pkg/aim_compon_interf/ | atm_export_tauy.F | |
| ./pkg/aim_compon_interf/ | atm_import_fields.F | |
| ./pkg/aim_compon_interf/ | atm_import_ocnconfig.F | |
| ./pkg/aim_compon_interf/ | atm_store_atmslp.F | |
| ./pkg/aim_compon_interf/ | atm_store_evmpr.F | |
| ./pkg/aim_compon_interf/ | atm_store_heatflux.F | |
| ./pkg/aim_compon_interf/ | atm_store_my_data.F | |
| ./pkg/aim_compon_interf/ | atm_store_qshortwave.F | |
| ./pkg/aim_compon_interf/ | atm_store_roenfx.F | |
| ./pkg/aim_compon_interf/ | atm_store_runoff.F | |
| ./pkg/aim_compon_interf/ | atm_store_saltfx.F | |
| ./pkg/aim_compon_interf/ | atm_store_seaice.F | |
| ./pkg/aim_compon_interf/ | atm_store_taux.F | |
| ./pkg/aim_compon_interf/ | atm_store_tauy.F | |
| ./pkg/aim_ocn_coupler/ | ATMVARS.h | |
| ./pkg/aim_ocn_coupler/ | accept_component_registrations.F | |
| ./pkg/aim_ocn_coupler/ | atm_to_ocn_maprunoff.F | |
| ./pkg/aim_ocn_coupler/ | atm_to_ocn_mapxyr8.F | |
| ./pkg/aim_v23/ | AIM2DYN.h | |
| ./pkg/aim_v23/ | AIM_DIAGS.h | |
| ./pkg/aim_v23/ | AIM_FFIELDS.h | |
| ./pkg/aim_v23/ | AIM_GRID.h | |
| ./pkg/aim_v23/ | AIM_OPTIONS.h | |
| ./pkg/aim_v23/ | AIM_PARAMS.h | |
| ./pkg/aim_v23/ | AIM_SIZE.h | |
| ./pkg/aim_v23/ | aim_aim2dyn.F | |
| ./pkg/aim_v23/ | aim_aim2dyn_exchanges.F | |
| ./pkg/aim_v23/ | aim_aim2land.F | |
| ./pkg/aim_v23/ | aim_aim2sioce.F | |
| ./pkg/aim_v23/ | aim_diagnostics.F | |
| ./pkg/aim_v23/ | aim_diagnostics_init.F | |
| ./pkg/aim_v23/ | aim_do_physics.F | |
| ./pkg/aim_v23/ | aim_dyn2aim.F | |
| ./pkg/aim_v23/ | aim_fields_load.F | |
| ./pkg/aim_v23/ | aim_initialise.F | |
| ./pkg/aim_v23/ | aim_land2aim.F | |
| ./pkg/aim_v23/ | aim_land_impl.F | |
| ./pkg/aim_v23/ | aim_mnc_init.F | |
| ./pkg/aim_v23/ | aim_readparms.F | |
| ./pkg/aim_v23/ | aim_sice2aim.F | |
| ./pkg/aim_v23/ | aim_sice_impl.F | |
| ./pkg/aim_v23/ | aim_surf_bc.F | |
| ./pkg/aim_v23/ | aim_tendency_apply.F | |
| ./pkg/aim_v23/ | aim_write_local.F | |
| ./pkg/aim_v23/ | aim_write_tave.F | |
| ./pkg/atm_common/ | ATM_COMMON_OPTIONS.h | |
| ./pkg/atm_common/ | atm_diagnostics_init.F | |
| ./pkg/autodiff/ | AUTODIFF_CPPOPTIONS.h | |
| ./pkg/autodiff/ | AUTODIFF_OPTIONS.h | |
| ./pkg/autodiff/ | active_file.F | |
| ./pkg/autodiff/ | active_file_ad.F | |
| ./pkg/autodiff/ | active_file_control.F | |
| ./pkg/autodiff/ | active_file_control_slice.F | |
| ./pkg/autodiff/ | active_file_g.F | |
| ./pkg/autodiff/ | active_file_loc.F | |
| ./pkg/autodiff/ | active_file_loc_ad.F | |
| ./pkg/autodiff/ | active_file_loc_control.F | |
| ./pkg/autodiff/ | active_file_loc_control_slice.F | |
| ./pkg/autodiff/ | active_file_loc_g.F | |
| ./pkg/autodiff/ | adcommon.h | |
| ./pkg/autodiff/ | addummy_in_stepping.F | |
| ./pkg/autodiff/ | adopen_adclose.F | |
| ./pkg/autodiff/ | adread_adwrite.F | |
| ./pkg/autodiff/ | autodiff_check.F | |
| ./pkg/autodiff/ | autodiff_inadmode_set.F | |
| ./pkg/autodiff/ | autodiff_inadmode_set_ad.F | |
| ./pkg/autodiff/ | autodiff_inadmode_set_g.F | |
| ./pkg/autodiff/ | autodiff_inadmode_unset.F | |
| ./pkg/autodiff/ | autodiff_inadmode_unset_ad.F | |
| ./pkg/autodiff/ | autodiff_inadmode_unset_g.F | |
| ./pkg/autodiff/ | autodiff_ini_model_io.F | |
| ./pkg/cost/ | adcost.h | |
| ./pkg/dic/ | alk_surfforcing.F | |
| ./pkg/fizhi/ | AtoC.F | |
| ./pkg/seaice/ | advect.F | |
| ./verification/aim.5l_Equatorial_Channel/code/ | aim_surf_bc.F | |
| ./verification/cpl_aim+ocn/code_cpl/ | ATMSIZE.h | |
| ./verification/cpl_aim+ocn/shared_code/ | ATMIDS.h | |
| ./verification/front_relax/code_ad/ | adcommon.h | |
| ./verification/global1x1_tot/code/ | autodiff_inadmode_set_ad.F | |
| ./verification/global1x1_tot/code/ | autodiff_inadmode_unset_ad.F | |
| ./verification/global1x1_tot/code_bulk_adj/ | autodiff_inadmode_set_ad.F | |
| ./verification/global1x1_tot/code_bulk_adj/ | autodiff_inadmode_unset_ad.F | |
| ./verification/global1x1_tot/code_seaice_adj/ | autodiff_inadmode_set_ad.F | |
| ./verification/global1x1_tot/code_seaice_adj/ | autodiff_inadmode_unset_ad.F | |
| ./verification/global_ocean.90x40x15/code_ad_vecinv/ | adcommon.h | |
| ./verification/global_ocean_ebm/code_ad/ | adcommon.h | |
| ./verification/hs94.1x64x5/code_ad/ | adcommon.h |