C
C Invocation from WRAPPER level...
C
C |
C |-THE_MODEL_MAIN :: Primary driver for the MITgcm algorithm
C | :: Called from WRAPPER level numerical
C | :: code invocation routine. On entry
C | :: to THE_MODEL_MAIN separate thread and
C | :: separate processes will have been established.
C | :: Each thread and process will have a unique ID
C | :: but as yet it will not be associated with a
C | :: specific region in decomposed discrete space.
C |
C |-INITIALISE_FIXED :: Set fixed model arrays such as topography,
C | | :: grid, solver matrices etc..
C | |
C | |-INI_PARMS :: Routine to set kernel model parameters.
C | | :: Kernel parameters are read from file "data"
C | | :: in directory in which code executes.
C | |
C | |-PACKAGES_BOOT :: Start up the optional package environment.
C | | :: Runtime selection of active packages.
C | |-PACKAGES_READPARMS :: read each package input parameter file
C | | |- ${PKG}_READPARMS
C | |
C | |-SET_PARMS :: Finalise model parameter setting (if fct of pkg usage)
C | |
C | |-INI_MODEL_IO :: Initialise Input/Output setting
C | | |-MNC_INIT :: Initialise MITgcm NetCDF interface (MNC)(see pkg/mnc)
C | | |-MNC_CW_INIT :: Initialise MNC grid and variable types (see pkg/mnc)
C | | |-MON_INIT :: Initialises monitor package ( see pkg/monitor )
C | |
C | |-INI_GRID :: Control grid array (vert. and horiz.) initialisation.
C | | | :: Grid arrays are held and described in GRID.h.
C | | |-LOAD_GRID_SPACING :: Load grid spacing (vector) from files
C | | |-INI_VERTICAL_GRID :: Set up vertical grid and coordinate
C | | |-INI_CARTESIAN_GRID :: Cartesian horiz. grid initialisation
C | | | :: (calculate grid from kernel parameters).
C | | |-INI_SPHERICAL_POLAR_GRID :: Spherical polar horiz. grid setting
C | | | :: (calculate grid from kernel parameters).
C | | |-INI_CURVILINEAR_GRID :: General orthogonal, structured horiz. grid
C | | | :: initialisation; input from raw grid files
C | | | :: (LONC.bin, LATC.bin, DXF.bin, ... ) or per
C | | | :: face file: horizGridFile(.faceXXX.bin)
C | | |-INI_CYLINDER_GRID :: Cylindrical horiz. grid setting
C | |
C | |-LOAD_REF_FILES :: Read-in reference vertical profiles (T,S,Rho)
C | |-INI_EOS :: Initialise Equation Of State (EOS) coefficients
C | |-SET_REF_STATE :: Set reference pressure/geopotential, reference
C | | :: stratification (for implicit IGW), vertical
C | | :: velocity scaling factor and anelastic ref. density
C | |-SET_GRID_FACTORS :: Set grid factors (fct of k) for deep-atmosphere
C | |
C | |-INI_DEPTHS :: Read (from "bathyFile") or set bathymetry/orography.
C | |-INI_MASKS_ETC :: Derive horizontal and vertical cell fractions and
C | | :: land masking for solid-fluid boundaries.
C | |
C | |-PACKAGES_INIT_FIXED :: do all packages fixed-initialisation setting
C | | |- ${PKG}_INIT_FIXED
C | |
C | |-INI_GLOBAL_DOMAIN :: Initialise domain related (global) quantities.
C | |-INI_LINEAR_PHISURF :: Set ref. surface Bo_surf
C | |
C | |-INI_CORI :: Set coriolis term. zero, f-plane, beta-plane,
C | | :: sphere options are coded.
C | |-INI_CG2D :: 2D conjugate grad solver initialisation.
C | |-INI_CG3D :: 3D conjugate grad solver initialisation.
C | |
C | |-CONFIG_SUMMARY :: Provide synopsis of kernel setup. Includes
C | | :: annotated table of kernel parameter settings.
C | |
C | |-PACKAGES_CHECK :: call each package configuration checking S/R
C | | |- ${PKG}_CHECK
C | |
C | |-CONFIG_CHECK :: Check config and parameter consistency.
C | |
C | |-WRITE_GRID :: write grid fields to output files
C | |-CPL_EXCH_CONFIGS :: exchange config with coupler-interface
C |
C |-CTRL_UNPACK :: Control vector support package. see pkg/ctrl
C |-COST_DEPENDENT_INIT :: ( see pkg/cost )
C |
C |-ADTHE_MAIN_LOOP :: Derivative evaluating form of main time stepping loop
C ! :: Automatically generated by TAMC/TAF.
C |
C |-THE_MAIN_LOOP :: Main timestepping loop routine.
C | |
C | |-INITIALISE_VARIA :: Set the initial conditions for time evolving fields
C | | |
C #ifdef ALLOW_AUTODIFF
C | | |-INI_DEPTHS \
C | | |-CTRL_DEPTH_INI \
C | | |-UPDATE_MASKS_ETC } ALLOW_DEPTH_CONTROL case
C | | |-UPDATE_CG2D /
C #endif
C | | |-INI_NLFS_VARS :: Initialise all Non-Lin Free-Surf arrays (SURFACE.h)
C | | |-INI_DYNVARS :: Initialise to zero all DYNVARS.h arrays
C | | |-INI_NH_VARS :: Initialise to zero all NH_VARS.h arrays
C | | |
C | | |-INI_FIELDS :: Control initialising model fields to non-zero
C | | | |-INI_VEL :: Initialize 3D flow field.
C | | | |-INI_THETA :: Set model initial temperature field.
C | | | |-INI_SALT :: Set model initial salinity field.
C | | | |-INI_PSURF :: Set model initial free-surface height/pressure.
C | | | |-READ_PICKUP :: Read in main model pickup files to restart a run.
C | | |
C | | |-INI_MIXING :: Initialise diapycnal diffusivity.
C | | |
C | | |-INI_FORCING :: Set model initial forcing fields, either
C | | | | :: set in-line or from file as shown here:
C | | | |-READ_FLD_XY_RS(zonalWindFile)
C | | | |-READ_FLD_XY_RS(meridWindFile)
C | | | |-READ_FLD_XY_RS(surfQnetFile)
C | | | |-READ_FLD_XY_RS(EmPmRfile)
C | | | |-READ_FLD_XY_RS(thetaClimFile)
C | | | |-READ_FLD_XY_RS(saltClimFile)
C | | | |-READ_FLD_XY_RS(surfQswFile)
C | | |
C | | |-AUTODIFF_INIT_VARIA :: (see pkg/autodiff )
C | | |
C | | |-PACKAGES_INIT_VARIABLES :: Does initialisation of time evolving
C | | | | ${PKG}_INIT_VARIA :: package data.
C | | |
C | | |-COST_INIT_VARIA :: ( see pkg/cost )
C | | |-CONVECTIVE_ADJUSTMENT_INI :: Apply conv. adjustment to initial state
C | | |
C | | |-CALC_R_STAR :: Calculate the new level thickness factor (r* coord)
C | | |-UPDATE_R_STAR :: Update the level thickness fraction (r* coord).
C | | |-UPDATE_SIGMA :: Update the level thickness fraction (sigma-coord).
C | | |-CALC_SURF_DR :: Calculate the new surface level thickness.
C | | |-UPDATE_SURF_DR :: Update the surface-level thickness fraction.
C | | |
C | | |-UPDATE_CG2D :: Update 2D conjugate grad. for Free-Surf.
C | | |
C | | |-INTEGR_CONTINUITY :: Integrate the continuity Equation
C | | | |-INTEGRATE_FOR_W :: Integrate for vertical velocity
C | | | |-OBCS_APPLY_W :: Open boundary package (see pkg/obcs).
C | | | |-UPDATE_ETAH :: Update Surface height/pressure
C | | |
C | | |-CALC_R_STAR :: Calculate the new level thickness factor (r* coord)
C | | |-CALC_SURF_DR :: Calculate the new surface level thickness.
C | | |
C | | |-STATE_SUMMARY :: Summarise model prognostic variables.
C | | |
C | | |-MONITOR :: Monitor state (see pkg/monitor)
C | | |
C | | |-DO_STATEVARS_TAVE :: Time averaging package ( see pkg/timeave ).
C | | | |-TIMEAVE_STATVARS :: Accumulate main model state variables
C | | | |-PTRACERS_TIMEAVE :: Accumulate passive tracers variables
C | | |
C | | |-DO_THE_MODEL_IO :: Controlling routine for IO
C | | | |-WRITE_STATE :: Write model state variables.
C | | | |-TIMEAVE_STATV_WRITE :: Write Time averaged output (see pkg/timeave)
C | | | |-FIZHI_WRITE_STATE :: Write Fizhi pkg output (see pkg/fizhi)
C | | | |-AIM_WRITE_TAVE :: Write AIM pkg output (see pkg/aim_v23)
C | | | |-LAND_OUTPUT :: Write Land pkg output (see pkg/land)
C | | | |-OBCS_OUTPUT :: Write OBCS pkg output (see pkg/obcs)
C | | | |-GMREDI_OUTPUT :: Write GM-Redi pkg output (see pkg/gmredi)
C | | | |-KPP_OUTPUT :: Write KPP pkg output (see pkg/kpp)
C | | | |-PP81_OUTPUT :: Write PP81 pkg output (see pkg/pp81)
C | | | |-KL10_OUTPUT :: Write KL10 pkg output (see pkg/kl10)
C | | | |-MY82_OUTPUT :: Write MY82 pkg output (see pkg/my82)
C | | | |-OPPS_OUTPUT :: Write OPPS pkg output (see pkg/opps)
C | | | |-GGL90_OUTPUT :: Write GGL90 pkg output (see pkg/ggl90)
C | | | |-SBO_CALC :: Compute SBO diagnostics (see pkg/sbo)
C | | | |-SBO_OUTPUT :: Write SBO pkg output (see pkg/sbo)
C | | | |-SEAICE_OUTPUT :: Write SeaIce pkg output (see pkg/seaice)
C | | | |-SHELFICE_OUTPUT :: Write ShelfIce pkg output (see pkg/shelfice)
C | | | |-BULKF_OUTPUT :: Write Bulk-Force output (see pkg/bulK_force)
C | | | |-THSICE_OUTPUT :: Write ThSIce pkg output (see pkg/thsice)
C | | | |-PTRACERS_OUTPUT :: Write pTracers pkg output (see pkg/ptracers)
C | | | |-MATRIX_OUTPUT :: Write Matrix pkg output (see pkg/matrix)
C | | | |-GCHEM_OUTPUT :: Write Geochemistry pkg output (see pkg/gchem)
C | | | |-CPL_OUTPUT :: Write Coupler-Interface output (see
C | | | | :: pkg/atm_compon_interf, pkg/ocn_compon_interf)
C | | | |-LAYERS_CALC :: Calculate layers diagnostics (see pkg/layers)
C | | | |-LAYERS_OUTPUT :: Write Layers pkg output (see pkg/layers)
C | | | |-DIAGNOSTICS_WRITE :: Write pkg/diagnostics output
C | | |
C====|>| ****************************
C====|>| BEGIN MAIN TIMESTEPPING LOOP
C====|>| ****************************
C | |-COST_AVERAGESFIELDS :: time-averaged Cost function terms (see pkg/cost)
C | |-PROFILES_INLOOP :: ( see pkg/profiles )
C | /
C | |-MAIN_DO_LOOP :: Open-AD case: Main timestepping loop routine
C | \ otherwise: just call FORWARD_STEP
C | |
C/\ | |-FORWARD_STEP :: Step forward a time-step ( AT LAST !!! )
C/\ | | |
C/\ | | |-AUTODIFF_INADMODE_UNSET :: Set/reset some adjoint flags
C/\ | | |-RESET_NLFS_VARS :: Reset some Non-Lin Free-Surf vars (Adjoint)
C/\ | | |-UPDATE_R_STAR :: Reset r-star factor variables (Adjoint)
C/\ | | |-UPDATE_SURF_DR :: Reset NLFS surface thickness vars (Adjoint)
C/\ | | |
C/\ | | |-PTRACERS_SWITCH_ONOFF :: Set/reset pTracers time-stepping switch
C/\ | | |-DIAGNOSTICS_SWITCH_ONOFF :: Activate/de-activate diagnostics
C/\ | | |-DO_STATEVARS_DIAGS ( 0 ) :: fill-up state variable diagnostics
C/\ | | |
C/\ | | |-NEST_CHILD_SETMEMO :: Nesting interface
C/\ | | |-NEST_PARENT_IO_1 :: Nesting interface
C/\ | | |
C/\ | | |-LOAD_FIELDS_DRIVER :: Control loading of input fields from files
C/\ | | |
C/\ | | |-BULKF_FORCING :: Calculate surface forcing (see pkg/bulk_force)
C/\ | | |-CHEAPAML :: Cheap AML driver ( see pkg/cheapaml )
C/\ | | |-CTRL_MAP_FORCING :: Control vector support package. (see pkg/ctrl)
C/\ | | |-DUMMY_IN_STEPPING :: Autodiff package ( pkg/autodiff ).
C/\ | | |
C/\ | | |-CPL_EXPORT_MY_DATA :: Send coupling fields to coupler
C/\ | | |-CPL_IMPORT_EXTERNAL_DATA :: Receive coupling fields from coupler
C/\ | | |
C/\ | | |-OASIS_PUT :: Oasis coupler interface
C/\ | | |-OASIS_GET :: Oasis coupler interface
C/\ | | |
C/\ | | |-EBM_DRIVER :: Calculate EBM type atmospheric forcing (see pkg/ebm)
C/\ | | |
C/\ | | |-DO_ATMOSPHERIC_PHYS :: Atmospheric physics computation
C/\ | | | |
C/\ | | | |-UPDATE_OCEAN_EXPORTS :: ( see pkg/fizhi )
C/\ | | | |-UPDATE_EARTH_EXPORTS :: ( see pkg/fizhi )
C/\ | | | |-UPDATE_CHEMISTRY_EXPORTS :: ( see pkg/fizhi )
C/\ | | | |-FIZHI_WRAPPER :: ( see pkg/fizhi )
C/\ | | | |-STEP_FIZHI_FG :: ( see pkg/fizhi )
C/\ | | | |-FIZHI_UPDATE_TIME :: ( see pkg/fizhi )
C/\ | | | |
C/\ | | | |-ATM_PHYS_DRIVER :: ( see pkg/atm_phys )
C/\ | | | |
C/\ | | | |-AIM_DO_PHYSICS :: ( see pkg/aim_v23 )
C/\ | | |
C/\ | | |-DO_OCEANIC_PHYS :: Oceanic (& seaice) physics computation
C/\ | | | |
C/\ | | | |-OBCS_CALC :: Open boundary. package (see pkg/obcs).
C/\ | | | |
C/\ | | | |-FRAZIL_CALC_RHS :: Compute FRAZIL tendencies ( see pkg/frazil )
C/\ | | | |-THSICE_MAIN :: Thermodynamic sea-ice driver (see pkg/thsice)
C/\ | | | |-SEAICE_MODEL :: Sea-ice model driver (see pkg/seaice )
C/\ | | | |-SEAICE_COST_SENSI :: Sea-ice cost-function (see pkg/seaice )
C/\ | | | |-SHELFICE_THERMODYNAMICS :: Compute ShelfIce thermo (pkg/shelfice)
C/\ | | | |-ICEFRONT_THERMODYNAMICS :: Compute IceFront thermo (pkg/icefront)
C/\ | | | |
C/\ | | | |-SALT_PLUME_DO_EXCH :: (see pkg/salt_plume )
C/\ | | | |-FREEZE_SURFACE :: Prevent SST to fall below TFreeze
C/\ | | | |-OCN_APPLY_IMPORT :: Apply imported fields from coupler
C/\ | | | |-EXTERNAL_FORCING_SURF:: Compute appropriately dimensioned
C/\ | | | | :: surface forcing terms.
C/\ | | | |-FIND_RHO_2D @ p(k) :: Calculate [rho(T,S,p)-Rho_0] of a slice
C/\ | | | |-FIND_RHO_2D @ p(k-1) :: Calculate [rho(T,S,p)-Rho_0] of a slice
C/\ | | | |-GRAD_SIGMA :: Calculate isoneutral gradients
C/\ | | | |-CALC_IVDC :: Set Implicit Vertical Diffusivity for Convection
C/\ | | | |-CALC_OCE_MXLAYER :: Diagnose Oceanic Mixed Layer depth
C/\ | | | |
C/\ | | | |-SALT_PLUME_CALC_DEPTH :: (see pkg/salt_plume )
C/\ | | | |-SALT_PLUME_VOLFRAC :: (see pkg/salt_plume )
C/\ | | | |-SALT_PLUME_APPLY (Temp) :: (see pkg/salt_plume )
C/\ | | | |-SALT_PLUME_APPLY (Salt) :: (see pkg/salt_plume )
C/\ | | | |-SALT_PLUME_FORCING_SURF :: (see pkg/salt_plume )
C/\ | | | |-KPP_CALC :: Compute KPP vertical mixing ( see pkg/kpp )
C/\ | | | |-PP81_CALC :: Compute PP81 vertical mixing ( see pkg/pp81 )
C/\ | | | |-KL10_CALC :: Compute KL10 vertical mixing ( see pkg/kl10 )
C/\ | | | |-MY82_CALC :: Compute MY82 vertical mixing ( see pkg/kl10 )
C/\ | | | |-GGL90_CALC :: Compute GGL90 vertical mixing (see pkg/ggl10)
C/\ | | | |-GMREDI_CALC_TENSOR :: Compute GM-Redi tensor ( see pkg/gmredi )
C/\ | | | |-DWNSLP_CALC_FLOW :: Compute Down-Slope flow (see pkg/down_slope)
C/\ | | | |-BBL_CALC_RHS :: Compute BBL tendencies ( see pkg/bbl )
C/\ | | | |-MYPACKAGE_CALC_RHS :: Compute mypackage tendencies (pkg/mypackage)
C/\ | | | |
C/\ | | | |-GMREDI_DO_EXCH :: ( see pkg/gmredi )
C/\ | | | |-KPP_DO_EXCH :: ( see pkg/kpp )
C/\ | | | |-DIAGS_RHO_G :: Compute some density related diagnostics
C/\ | | | |-DIAGS_OCEANIC_SURF_FLUX :: Diagnose oceanic surface fluxes
C/\ | | | |-SALT_PLUME_DIAGNOSTICS_FILL :: (see pkg/salt_plume )
C/\ | | | |-ECCO_PHYS :: ( see pkg/ecco )
C/\ | | |
C/\ | | |-STREAMICE_TIMESTEP :: ( see pkg/streamice )
C/\ | | |
C/\ | | |-GCHEM_CALC_TENDENCY :: geochemistry driver routine (see pkg/gchem)
C/\ | | |
C/\ | | |-LONGSTEP_AVERAGE :: Averaging state vars ( see pkg/longstep )
C/\ | | |-LONGSTEP_THERMODYNAMICS :: Step forward tracers ( see pkg/longstep )
C/\ | | |
C/\ | | |-THERMODYNAMICS :: theta, salt + tracer equations driver.
C/\ | | | | (synchronous time-stepping case)
C/\ | | | |-CALC_WSURF_TR :: Compute T & S Linear-Free-Surf correction
C/\ | | | |-PTRACERS_CALC_WSURF_TR :: Compute Tracers Linear-Free-Surf correct.
C/\ | | | |
C/\ | | | |-GMREDI_RESIDUAL_FLOW :: Get the flow field used to advect tracers
C/\ | | | |
C/\ | | | |-TEMP_INTEGRATE :: Step forward Prognostic Eq for Temperature.
C/\ | | | | |
C/\ | | | | |-ADAMS_BASHFORTH3 :: Extrapolate tracer forward in time (AB-3)
C/\ | | | | |-ADAMS_BASHFORTH2 :: Extrapolate tracer forward in time (AB-2)
C/\ | | | | |-CALC_3D_DIFFUSIVITY :: set vertical diffusivity
C/\ | | | | |
C/\ | | | | |-GAD_SOM_ADVECT :: Second Order Moment (SOM) advection
C/\ | | | | |-GAD_ADVECTION :: Generalised advection driver (multi-dim
C/\ | | | | | advection case) (see pkg/gad).
C/\ | | | | |-CALC_ADV_FLOW :: set 3-D flow field to advect tracer
C/\ | | | | |-APPLY_FORCING_T :: Problem specific forcing for temperature.
C/\ | | | | |-GAD_CALC_RHS :: Calculate Advection-Diffusion tendency terms
C/\ | | | | |
C/\ | | | | |-ADAMS_BASHFORTH3 :: Extrapolate tendency forward in time (AB-3)
C/\ | | | | |-ADAMS_BASHFORTH2 :: Extrapolate tendency forward in time (AB-2)
C/\ | | | | |-FREESURF_RESCALE_G :: Re-scale Gt for free-surface height.
C/\ | | | | |-DWNSLP_APPLY :: Add pkg/down_slope tendency
C/\ | | | | |
C/\ | | | | |-TIMESTEP_TRACER :: Step tracer field forward in time
C/\ | | | | |
C/\ | | | | |-GAD_IMPLICIT_R :: Solve vertical implicit Advect-Diffus. eqn.
C/\ | | | | |-IMPLDIFF :: Solve vertical implicit diffusion equation.
C/\ | | | | |-CYCLE_AB_TRACER :: Cycle time-stepping arrays for tracer field
C/\ | | | | |-CYCLE_TRACER :: Cycle time-stepping arrays for tracer field
C/\ | | | |
C/\ | | | |-SALT_INTEGRATE :: Step forward Prognostic Eq for Salinity.
C/\ | | | | | same sequence of calls as in TEMP_INTEGRATE
C/\ | | | |
C/\ | | | |-PTRACERS_INTEGRATE :: Integrate other tracer(s) (see pkg/ptracers).
C/\ | | | | | same sequence of calls as in TEMP_INTEGRATE
C/\ | | | | |-OBCS_APPLY_PTRACER :: Open boundary package for pTracers
C/\ | | | |
C/\ | | | |-OBCS_APPLY_TS :: Open boundary package (see pkg/obcs ).
C/\ | | |
C/\ | | |-LONGSTEP_AVERAGE :: Averaging state vars ( see pkg/longstep )
C/\ | | |-LONGSTEP_THERMODYNAMICS :: Step forward tracers ( see pkg/longstep )
C/\ | | |
C/\ | | |-DO_STAGGER_FIELDS_EXCHANGES :: Update overlap regions of arrays
C/\ | | | Theta & Salt (implicit IGW case)
C/\ | | |
C/\ | | |-DYNAMICS :: Momentum equations driver.
C/\ | | | |
C/\ | | | |-CALC_GRAD_PHI_SURF :: Calculate the gradient of the surface
C/\ | | | | Potential anomaly.
C/\ | | | |-CALC_VISCOSITY :: Calculate net vertical viscosity
C/\ | | | |-MOM_CALC_3D_STRAIN :: Calculates the strain tensor of 3D flow field
C/\ | | | |-OBCS_COPY_UV_N :: for Stevens bndary Conditions (see pkg/obcs)
C/\ | | | |
C/\ | | | |-CALC_PHI_HYD :: Integrate the hydrostatic relation.
C/\ | | | |-MOM_FLUXFORM :: Flux Form momentum eqn. (pkg/mom_fluxform)
C/\ | | | |-MOM_VECINV :: Vector Invariant momentum eqn (pkg/mom_vecinv)
C/\ | | | |-MOM_CALC_SMAG_3D :: Calculate Smagorinsky 3D (harmonic) viscosities
C/\ | | | |-MOM_UV_SMAG_3D :: Calculate U,V mom. tendency due to Smag 3D Visc
C/\ | | | |-TIMESTEP :: Step horizontal momentum fields forward in time
C/\ | | | |
C/\ | | | |-MOM_U_IMPLICIT_R :: Solve implicitly vertical Adv-Diffus equation.
C/\ | | | |-IMPLDIFF :: Solve vertical implicit diffusion equation.
C/\ | | | |-OBCS_SAVE_UV_N :: for Stevens bndary Conditions (see pkg/obcs)
C/\ | | | |-OBCS_APPLY_UV :: Apply Open bndary Conditions to provisional U,V
C/\ | | | |-IMPLDIFF :: (CD-Scheme) Solve vertical impl. diffus. eqn
C/\ | | | |
C/\ | | | |-CALC_GW :: Vert. momentum tendency terms (Non-Hydrostatic)
C/\ | | | | |-MOM_W_SMAG_3D :: Calculate W mom. tendency due to Smag 3D Visc
C/\ | | | |-TIMESTEP_WVEL :: Step vert mom forward in time (Non-Hydrostatic)
C/\ | | |
C/\ | | |-MNC_UPDATE_TIME :: Update MNC time record (see pkg/mnc)
C/\ | | |
C/\ | | |-UPDATE_R_STAR :: Update the level thickness fraction (r* coord).
C/\ | | |-UPDATE_SIGMA :: Update the level thickness fraction (sigma-coord).
C/\ | | |-UPDATE_R_STAR :: Update the level thickness fraction.
C/\ | | |-UPDATE_SURF_DR :: Update the surface-level thickness fraction.
C/\ | | |-UPDATE_CG2D :: Update 2D conjugate grad. for Free-Surf.
C/\ | | |
C/\ | | |-SHAP_FILT_APPLY_UV :: Apply Shapiro Filter to provisional velocity
C/\ | | |-ZONAL_FILT_APPLY_UV :: Apply Zonal Filter to provisional velocity
C/\ | | |
C/\ | | |-SOLVE_FOR_PRESSURE :: Find surface pressure.
C/\ | | | |-CALC_DIV_GHAT :: Form the RHS of the surface pressure eqn.
C/\ | | | |-CG2D :: Two-dim pre-con. conjugate-gradient.
C/\ | | | |-PRE_CG3D :: Finish to set the RHS of the 3-D pressure eqn.
C/\ | | | |-CG3D :: Three-dim pre-con. conjugate-gradient solver.
C/\ | | | |-POST_CG3D :: finalise solution of NH and Free-Surf pressure
C/\ | | |
C/\ | | |-MOMENTUM_CORRECTION_STEP :: Finalise momentum stepping
C/\ | | | |-CALC_GRAD_PHI_SURF :: Return DDx and DDy of surface pressure
C/\ | | | |-CORRECTION_STEP :: Pressure correction to momentum
C/\ | | | |-OBCS_APPLY_UV :: Open boundary package (see pkg/obcs).
C/\ | | | |-SHAP_FILT_APPLY_UV :: Apply Shapiro Filter to latest velocity
C/\ | | | |-ZONAL_FILT_APPLY_UV :: Apply Zonal Filter to latest velocity
C/\ | | |
C/\ | | |-INTEGR_CONTINUITY :: Integrate continuity equation (see above)
C/\ | | |
C/\ | | |-CALC_R_STAR :: Calculate the new level thickness factor (r* coord)
C/\ | | |-CALC_SURF_DR :: Calculate the new surface level thickness.
C/\ | | |
C/\ | | |-DO_STAGGER_FIELDS_EXCHANGES :: Update overlap regions of arrays
C/\ | | | uVel,vVel & wVel (stagger-time-step case)
C/\ | | |
C/\ | | |-DO_STATEVARS_DIAGS ( 1 ) :: fill-up state variable diagnostics
C/\ | | |
C/\ | | |-THERMODYNAMICS :: theta, salt + tracer Eq. driver (see above).
C/\ | | | (staggered time-stepping case)
C/\ | | |
C/\ | | |-TRACERS_CORRECTION_STEP :: Finalise tracer stepping:
C/\ | | | | :: apply filter, conv.adjustment
C/\ | | | |-TRACERS_IIGW_CORRECTION :: apply Implicit IGW adjustment to T & S
C/\ | | | |-SHAP_FILT_APPLY_TS :: Apply Shapiro Filter to latest T & S
C/\ | | | |-ZONAL_FILT_APPLY_TS :: Apply Zonal Filter to latest T & S
C/\ | | | |-PTRACERS_ZONAL_FILT_APPLY :: Apply Zonal Filter to pTracers
C/\ | | | |-SALT_FILL :: Fill up negative Salt
C/\ | | | |-OPPS_INTERFACE :: ( see pkg/opps )
C/\ | | | |-CONVECTIVE_ADJUSTMENT :: Apply convective adjustment
C/\ | | | |-MATRIX_STORE_TENDENCY_IMP :: ( see pkg/matrix )
C/\ | | |
C/\ | | |-LONGSTEP_AVERAGE :: Averaging state vars ( see pkg/longstep )
C/\ | | |-LONGSTEP_THERMODYNAMICS :: Step forward tracers ( see pkg/longstep )
C/\ | | |
C/\ | | |-GCHEM_FORCING_SEP :: Tracer forcing for gchem pkg (if tracer
C/\ | | | :: dependent tendencies calculated separately)
C/\ | | |
C/\ | | |-DO_FIELDS_BLOCKING_EXCHANGES :: Sync up overlap regions.
C/\ | | |
C/\ | | |-DO_STATEVARS_DIAGS ( 2 ) :: fill-up state variable diagnostics
C/\ | | |
C/\ | | |-GRIDALT_UPDATE :: ( see pkg/gridalt )
C/\ | | |-STEP_FIZHI_CORR :: ( see pkg/fizhi )
C/\ | | |
C/\ | | |-FLT_MAIN :: Step forward Floats (see pkg/flt)
C/\ | | |
C/\ | | |-DO_STATEVARS_TAVE :: Time averaging package (see above)
C/\ | | |
C/\ | | |-NEST_PARENT_IO_2 :: Nesting interface
C/\ | | |-NEST_CHILD_TRANSP :: Nesting interface
C/\ | | |
C/\ | | |-MONITOR :: Monitor package (pkg/monitor).
C/\ | | |
C/\ | | |-COST_TILE :: ( see pkg/cost )
C/\ | | |
C/\ | | |-DO_THE_MODEL_IO :: Controlling routine for IO (see above)
C/\ | | |
C/\ | | |-PTRACERS_RESET :: Re-initialize PTRACERS ( see pkg/ptracers )
C/\ | | |
C/\ | | |-DO_WRITE_PICKUP :: Controlling routine for writing files to restart
C/\ | | | |-PACKAGES_WRITE_PICKUP :: Write pickup files for each package
C/\ | | | | | :: which needs it to restart
C/\ | | | | |-GAD_WRITE_PICKUP :: Write Generic AdvDiff pickups for SOM
C/\ | | | | | :: advection scheme (pkg/generic_advdiff)
C/\ | | | | |-CD_CODE_WRITE_PICKUP :: Write CD-code pickups (see pkg/cd_code)
C/\ | | | | |-OBCS_WRITE_PICKUP :: Write OBCS pickups (see pkg/obcs)
C/\ | | | | |-GGL90_WRITE_PICKUP :: Write GGL90 pickups (see pkg/ggl90)
C/\ | | | | |-BBL_WRITE_PICKUP :: Write BBL pickups (see pkg/bbl)
C/\ | | | | |-CHEAPAML_WRITE_PICKUP :: Write CheapAML pickups (pkg/cheapaml)
C/\ | | | | |-FLT_WRITE_PICKUP :: Write Floats pickups (see pkg/flt)
C/\ | | | | |-PTRACERS_WRITE_PICKUP :: Write pTracers pickups (pkg/ptracers)
C/\ | | | | |-GCHEM_WRITE_PICKUP :: Write Geo-Chem pickups (see pkg/gchem)
C/\ | | | | |-SEAICE_WRITE_PICKUP :: Write SeaIce pickups (see pkg/seaice)
C/\ | | | | |-STREAMICE_WRITE_PICKUP :: Write StreamIce pickups (pkg/streamice)
C/\ | | | | |-THSICE_WRITE_PICKUP :: Write ThSIce pickups (see pkg/thsice)
C/\ | | | | |-LAND_WRITE_PICKUP :: Write Land pickups (see pkg/land)
C/\ | | | | |-ATM_PHYS_WRITE_PICKUP :: Write Atm-Phys pickups (pkg/atm_phys)
C/\ | | | | |-FIZHI_WRITE_PICKUP :: Write Fizhi pickups (see pkg/fizhi)
C/\ | | | | |-FIZHI_WRITE_VEGTILES :: Write Fizhi VegTiles (see pkg/fizhi)
C/\ | | | | |-FIZHI_WRITE_DATETIME :: Write Fizhi DateTime (see pkg/fizhi)
C/\ | | | | |-CPL_WRITE_PICKUP :: Write Coupling-Interface pickups
C/\ | | | | |-MYPACKAGE_WRITE_PICKUP :: Write pkg/mypackage pickups
C/\ | | | |
C/\ | | | |-WRITE_PICKUP :: Write main model pickup files.
C/\ | | |
C/\ | | |-AUTODIFF_INADMODE_SET :: Set/reset some adjoint flags
C | |
C<===|=| **************************
C<===|=| END MAIN TIMESTEPPING LOOP
C<===|=| **************************
C | |
C | |-COST_AVERAGESFIELDS :: Time-averaged Cost function terms (see pkg/cost)
C | |-PROFILES_INLOOP :: ( see pkg/profiles )
C | |-COST_FINAL :: Cost function package (see pkg/cost)
C |
C |-CTRL_PACK :: Control vector support package (see pkg/ctrl)
C |
C |-GRDCHK_MAIN :: Gradient check package (see pkg/grdchk)
C |
C |-TIMER_PRINTALL :: Computational timing summary
C |
C |-COMM_STATS :: Summarise inter-proc and inter-thread communication
C | :: events.