| Directory | File Name | Description |
| ./eesupp/src/ | scatter_2d.F | |
| ./model/inc/ | SIZE.h | |
| ./model/inc/ | SOLVE_FOR_PRESSURE.h | |
| ./model/inc/ | SOLVE_FOR_PRESSURE3D.h | |
| ./model/inc/ | SURFACE.h | |
| ./model/src/ | set_defaults.F | |
| ./model/src/ | solve_for_pressure.F | |
| ./model/src/ | solve_pentadiagonal.F | |
| ./model/src/ | solve_tridiagonal.F | |
| ./model/src/ | state_summary.F | |
| ./model/src/ | swfrac.F | |
| ./optim/ | simul.F | |
| ./pkg/aim_ocn_coupler/ | sendout_component_configs.F | |
| ./pkg/aim_ocn_coupler/ | set_runoffmap.F | |
| ./pkg/ecco/ | sw_adtg.F | |
| ./pkg/ecco/ | sw_ptmp.F | |
| ./pkg/fizhi/ | sibber.h | |
| ./pkg/fizhi/ | snwmid.h | |
| ./pkg/fizhi/ | step_fizhi_corr.F | |
| ./pkg/fizhi/ | step_fizhi_fg.F | |
| ./pkg/fizhi/ | step_physics.F | |
| ./pkg/rw/ | set_write_global_fld.F | |
| ./pkg/sbo/ | SBO.h | |
| ./pkg/sbo/ | SBO_OPTIONS.h | |
| ./pkg/sbo/ | sbo_calc.F | |
| ./pkg/sbo/ | sbo_check.F | |
| ./pkg/sbo/ | sbo_diags.F | |
| ./pkg/sbo/ | sbo_readparms.F | |
| ./pkg/sbo/ | sbo_rho.F | |
| ./pkg/sbo/ | sbo_writevector.F | |
| ./pkg/seaice/ | SEAICE.h | |
| ./pkg/seaice/ | SEAICE_DIAGS.h | |
| ./pkg/seaice/ | SEAICE_FFIELDS.h | |
| ./pkg/seaice/ | SEAICE_GRID.h | |
| ./pkg/seaice/ | SEAICE_OPTIONS.h | |
| ./pkg/seaice/ | SEAICE_PARAMS.h | |
| ./pkg/seaice/ | seaice_ad_check_lev1_dir.h | |
| ./pkg/seaice/ | seaice_ad_check_lev2_dir.h | |
| ./pkg/seaice/ | seaice_ad_check_lev3_dir.h | |
| ./pkg/seaice/ | seaice_check.F | |
| ./pkg/seaice/ | seaice_do_diags.F | |
| ./pkg/seaice/ | seaice_exch.F | |
| ./pkg/seaice/ | seaice_exch_uv.F | |
| ./pkg/seaice/ | seaice_get_forcing.F | |
| ./pkg/seaice/ | seaice_init.F | |
| ./pkg/seaice/ | seaice_mnc_init.F | |
| ./pkg/seaice/ | seaice_model.F | |
| ./pkg/seaice/ | seaice_monitor.F | |
| ./pkg/seaice/ | seaice_pickup.F | |
| ./pkg/seaice/ | seaice_readparms.F | |
| ./pkg/seaice/ | seaice_summary.F | |
| ./pkg/shap_filt/ | SHAP_FILT.h | |
| ./pkg/shap_filt/ | SHAP_FILT_OPTIONS.h | |
| ./pkg/shap_filt/ | shap_filt_apply_ts.F | |
| ./pkg/shap_filt/ | shap_filt_apply_uv.F | |
| ./pkg/shap_filt/ | shap_filt_diagnostics_init.F | |
| ./pkg/shap_filt/ | shap_filt_init_fixed.F | |
| ./pkg/shap_filt/ | shap_filt_readparms.F | |
| ./pkg/shap_filt/ | shap_filt_relvort3.F | |
| ./pkg/shap_filt/ | shap_filt_tracer_s1.F | |
| ./pkg/shap_filt/ | shap_filt_tracer_s2.F | |
| ./pkg/shap_filt/ | shap_filt_tracer_s2g.F | |
| ./pkg/shap_filt/ | shap_filt_tracer_s4.F | |
| ./pkg/shap_filt/ | shap_filt_tracerold.F | |
| ./pkg/shap_filt/ | shap_filt_u.F | |
| ./pkg/shap_filt/ | shap_filt_uv_s1.F | |
| ./pkg/shap_filt/ | shap_filt_uv_s2.F | |
| ./pkg/shap_filt/ | shap_filt_uv_s2c.F | |
| ./pkg/shap_filt/ | shap_filt_uv_s2g.F | |
| ./pkg/shap_filt/ | shap_filt_uv_s4.F | |
| ./pkg/shap_filt/ | shap_filt_v.F | |
| ./pkg/sphere/ | sphere.F | |
| ./pkg/sphere/ | sphere.h | |
| ./verification/MLAdjust/code/ | SIZE.h | |
| ./verification/adjust_nlfs.cs-32x32x1/code/ | SIZE.h | |
| ./verification/adjustment.128x64x1/code/ | SIZE.h | |
| ./verification/adjustment.cs-32x32x1/code/ | SIZE.h | |
| ./verification/advect_cs/code/ | SIZE.h | |
| ./verification/advect_xy/code/ | SIZE.h | |
| ./verification/advect_xz/code/ | SIZE.h | |
| ./verification/aim.5l_Equatorial_Channel/code/ | SIZE.h | |
| ./verification/aim.5l_LatLon/code/ | SIZE.h | |
| ./verification/aim.5l_cs/code/ | SHAP_FILT_OPTIONS.h | |
| ./verification/aim.5l_cs/code/ | SIZE.h | |
| ./verification/biogeo/code/ | SIZE.h | |
| ./verification/carbon/code_ad/ | SIZE.h | |
| ./verification/cfc_example/code/ | SIZE.h | |
| ./verification/cfc_offline/code/ | SIZE.h | |
| ./verification/cpl_aim+ocn/code_atm/ | SIZE.h | |
| ./verification/cpl_aim+ocn/code_ocn/ | SIZE.h | |
| ./verification/dic_example/code/ | SIZE.h | |
| ./verification/dome/code/ | SIZE.h | |
| ./verification/exp0/code/ | SIZE.h | |
| ./verification/exp1/code/ | SIZE.h | |
| ./verification/exp2/code/ | SIZE.h | |
| ./verification/exp4/code/ | SIZE.h | |
| ./verification/exp5/code/ | SIZE.h | |
| ./verification/fizhi-cs-32x32x10/code/ | SIZE.h | |
| ./verification/fizhi-cs-aqualev10/code/ | SIZE.h | |
| ./verification/fizhi-gridalt-hs/code/ | SIZE.h | |
| ./verification/flt_example/code/ | SIZE.h | |
| ./verification/front_relax/code/ | SIZE.h | |
| ./verification/front_relax/code_ad/ | SIZE.h | |
| ./verification/global1x1_tot/code/ | SIZE.h | |
| ./verification/global1x1_tot/code_bulk_adj/ | SIZE.h | |
| ./verification/global1x1_tot/code_seaice_adj/ | SEAICE_OPTIONS.h | |
| ./verification/global1x1_tot/code_seaice_adj/ | SIZE.h | |
| ./verification/global2x2_tot/code/ | SIZE.h | |
| ./verification/global_ocean.90x40x15/code/ | SIZE.h | |
| ./verification/global_ocean.90x40x15/code_ad/ | SIZE.h | |
| ./verification/global_ocean.90x40x15/code_ad_vecinv/ | SIZE.h | |
| ./verification/global_ocean.cs32x15/code/ | SIZE.h | |
| ./verification/global_ocean.cs32x15/code_alt/code.12t_32x16/ | SIZE.h | |
| ./verification/global_ocean.cs32x15/code_alt/code.176t_8x4/ | SIZE.h | |
| ./verification/global_ocean.cs32x15/code_alt/code.192t_8x4/ | SIZE.h | |
| ./verification/global_ocean.cubed32x32x30/code/ | SIZE.h | |
| ./verification/global_ocean_ebm/code/ | SIZE.h | |
| ./verification/global_ocean_ebm/code_ad/ | SIZE.h | |
| ./verification/global_ocean_pressure/code/ | SIZE.h | |
| ./verification/global_with_exf/code/ | SIZE.h | |
| ./verification/hs94.128x64x5/code/ | SIZE.h | |
| ./verification/hs94.1x64x5/code/ | SIZE.h | |
| ./verification/hs94.1x64x5/code_ad/ | SIZE.h | |
| ./verification/hs94.cs-32x32x5/code/ | SIZE.h | |
| ./verification/ideal_2D_oce/code/ | SIZE.h | |
| ./verification/internal_wave/code/ | SIZE.h | |
| ./verification/inverted_barometer/code/ | SIZE.h | |
| ./verification/lab_sea/code/ | SIZE.h | |
| ./verification/matrix_example/code/ | SIZE.h | |
| ./verification/natl_box/code/ | SIZE.h | |
| ./verification/natl_box_adjoint/code/ | SIZE.h | |
| ./verification/natl_box_adjoint/code_bulk/ | SIZE.h | |
| ./verification/natl_box_adjoint/code_seaice/ | SEAICE_OPTIONS.h | |
| ./verification/natl_box_adjoint/code_seaice/ | SIZE.h | |
| ./verification/plume_on_slope/code/ | SIZE.h | |
| ./verification/rotating_tank/code/ | SIZE.h | |
| ./verification/solid-body.cs-32x32x1/code/ | SIZE.h | |
| ./verification/tidal_basin_2d/code/ | SIZE.h | |
| ./verification/tutorial_held_suarez_cs/code/ | SIZE.h | |
| ./verification/vermix/code/ | SIZE.h |