A A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
A22		13
abEps	Adams-Bashforth-2 stabilizing weight	20
ABIOTIC_PARMS		4
ABLCL1		7
ABLCL2		7
ABLCO2		7
ABLWIN		9
ABLWV1		6
ABLWV2		6
ABSAER		7
ABSCL1		6
ABSCL2		6
ABSDRY		8
ABSWV1		9
ABSWV2		6
addFrictionHeating	account for frictional heating	21
addMassFile	File containing source/sink of fluid in the interior	7
addSwallFile	File containing 2-D additional Southern cell-edge wall	8
addWwallFile	File containing 2-D additional Western cell-edge wall	8
adjDumpFreq		15
adjMonitorFreq		6
adTapeDir	read-write checkpointing tape files from/to this	21
aim_abs_pCO2	pCO2 dependence coeff. of CO2 band LW absortion	6
aim_albFile	file name for Albedo input file (F.M. surfBC)	6
aim_clrSkyDiag	compute clear-sky radiation for diagnostics	11
aim_diagFreq	Frequency^-1 for diagnostic output (s)	6
aim_dragStrato	stratospheric-drag damping time scale (s)	11
aim_energPrecip	account for energy of precipitation (snow & rain temp)	10
aim_fixed_pCO2	fixed and uniform pCO2 value for AIM radiation	7
aim_LandFile	file name for Land fraction	7
aim_lstFile	file name for Land.Surf.Temp (F.M. surfBC)	7
aim_MMsufx	sufix for all Monthly Mean surface forcing files	8
aim_MMsufxLength	Length of sufix (Monthly Mean surf. forcing files)	8
aim_oiceFile	file name for Sea Ice fraction (F.M. surfBC)	7
AIM_PAR_CNV		2
AIM_PAR_FOR		2
AIM_PAR_LSC		2
AIM_PAR_RAD		2
AIM_PAR_SFL		2
AIM_PAR_VDI		2
AIM_PARAMS		2
aim_pickup_read_mnc		9
aim_pickup_write_mnc		9
aim_qfxFile	file name for ocean q-flux	7
aim_select_pCO2	select AIM CO2 formulation: =0 (default): prescribed absorp. in CO2 band (=ABLCO2) =1: absorption fct of prescribed pCO2 (aim_fixed_pCO2) =2: same as 0 with passive, well-mixed pCO2 atm box =3: same as 1 with evolving, well-mixed pCO2 atm-box	21
aim_selectOceAlbedo	select ocean albedo scheme: =0: constant (default) =1 : function of Lat, Briegleb et al. 1986	7
aim_snapshot_mnc		10
aim_snowFile	file name for Snow depth (F.M. surfBC)	7
aim_splitSIOsFx	compute separately Sea-Ice & Ocean surf. Flux	13
aim_sstFile	file name for Sea.Surf.Temp (F.M. surfBC)	7
aim_surfForc_NppCycle	Number of time period per Cycle (e.g. 12)	11
aim_surfForc_TimePeriod	Length of forcing time period (e.g. 1 month)	8
aim_surfForc_TransRatio	transition ratio from one month to the next	7
aim_surfPotTemp	surf.Temp input file is in Pot.Temp (aim_useMMsurfFc)	7
aim_swcFile	file name for Soil Water content (F.M. surfBC)	9
aim_taveFreq	Frequency^-1 for time-average output (s)	11
aim_tendFreq	Frequency^-1 for tendencies output (s)	6
aim_timeave_mnc		10
aim_useFMsurfBC	select surface B.C. from Franco Molteni	9
aim_useMMsurfFc	select Monthly Mean surface forcing (e.g., NCEP)	14
aim_vegFile	file name for vegetation fraction (F.M. surfBC)	6
AirHumidityFile		5
airPotTempFile		7
AirQFile		8
AirTempFile		15
ALBCL		6
albColdSnow	albedo of cold (=dry) new snow (Tsfc < tempSnowAlbL)	16
ALBICE		8
albIceMax	max albedo of bare ice (thick ice)	7
albIceMin	minimum ice albedo (very thin ice)	6
albOldSnow	albedo of old snow (snowAge > 35.d)	14
ALBSEA		9
ALBSN		8
albWarmSnow	albedo of warm (=wet) new snow (Tsfc = 0)	12
allowFreezing	Allows surface water to freeze and form ice	9
allowInteriorFreezing	Allow water at depth to freeze and rise to the surface	4
alpfe	solubility of aeolian iron	12
alph_AB	Adams-Bashforth-3 primary factor	25
alpha_photo	[g C g Chl-1 m2 W-1 s-1]	5
alphaUniform		6
applyExchUV_early	Apply EXCH to U,V earlier, just before integr_continuity	8
applyIcefrontTendS		5
applyIcefrontTendT		5
apressure_errfile		8
apressure_exfremo_intercept		5
apressure_exfremo_slope		5
apressure_interpMethod		8
apressure_lat0		7
apressure_lat_inc		7
apressure_lon0		7
apressure_lon_inc		8
apressure_nlat		8
apressure_nlon		8
apressureconst		5
apressurefile		12
apressureperiod		8
apressureRepCycle		6
apressurestartdate1		5
apressurestartdate2		5
apressureStartTime		7
aqh_errfile		8
aqh_exfremo_intercept		5
aqh_exfremo_slope		5
aqh_interpMethod		8
aqh_lat0		7
aqh_lat_inc		7
aqh_lon0		7
aqh_lon_inc		8
aqh_nlat		8
aqh_nlon		8
aqhconst		5
aqhfile		13
aqhperiod		8
aqhRepCycle		6
aqhstartdate1		5
aqhstartdate2		5
aqhStartTime		7
AreaFile	File containing initial sea-ice concentration	7
areamask_exfremo_intercept		5
areamask_exfremo_slope		5
areamask_interpMethod		8
areamask_lat0		7
areamask_lat_inc		7
areamask_lon0		7
areamask_lon_inc		8
areamask_nlat		8
areamask_nlon		8
areamaskconst		5
areamaskfile		12
areamaskperiod		8
areamaskRepCycle		6
areamaskstartdate1		5
areamaskstartdate2		5
areamaskStartTime		7
areamaskTauRelax		4
areaMax		4
areaMin		4
Arelaxobcsbound		8
Arelaxobcsinner		8
argosfile		9
argosstartdate1		7
argosstartdate2		6
argotfile		9
argotstartdate1		7
argotstartdate2		8
atemp_errfile		8
atemp_exfremo_intercept		5
atemp_exfremo_slope		5
atemp_interpMethod		8
atemp_lat0		7
atemp_lat_inc		7
atemp_lon0		7
atemp_lon_inc		8
atemp_nlat		8
atemp_nlon		8
atempconst		5
atempfile		12
atempperiod		8
atempRepCycle		6
atempstartdate1		5
atempstartdate2		5
atempStartTime		7
atm_Cp	specific heat (Cp) of the (dry) air at constant pressure	44
atm_emissivity		5
ATM_PHYS_PARM01		2
atm_Po	standard reference pressure	80
atm_Rd	gas constant for dry air	16
atm_Rq	water vapour specific volume anomaly relative to dry air	20
atmCFC_inpFile	file name of Atmospheric CFC time series (ASCII file)	11
atmCFC_recSepTime	time spacing between 2 records of atmos CFC [s]	8
atmCFC_timeOffset	time offset for atmos CFC (cfcTime = myTime + offSet)	9
atmCFC_yNorthBnd	Northern Lat boundary for interpolation [y-unit]	7
atmCFC_ySouthBnd	Southern Lat boundary for interpolation [y-unit]	9
atmcp	mean atmospheric specific heat [J/kg/K]	13
atmosphere_nml		2
atmosTauuFile		7
atmosTauvFile		7
atmosWindFile		7
atmpCO2init	Atmospheric pCO2 initial value of well-mixed atm. box	7
atmPhys_addTendS	apply ATM_PHYS tendency to Specific Humid	6
atmPhys_addTendT	apply ATM_PHYS tendency to temperature	7
atmPhys_addTendU	apply ATM_PHYS tendency to U-component wind	6
atmPhys_addTendV	apply ATM_PHYS tendency to V-component wind	6
atmPhys_albedoFile	name of Albedo file	7
atmPhys_dampUVfac	damping coefficient for each level	14
atmPhys_mxldFile	name of Mixed-Layer Depth file	7
atmPhys_qFlxFile	name of Q-flux file	6
atmPhys_sstFile	name of initial SST [in K] file	5
atmPhys_stepSST	step forward SST	8
atmPhys_tauDampUV	damping time-scale (s)	8
atmrho	mean atmospheric density [kg/m^3]	18
autodiff_mnc		8
AUTODIFF_PARM01		2
averagingFreq	frequency (in s) for periodic averaging interval	7
averagingPhase	phase (in s) for periodic averaging interval	4
B A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
B_glen_isothermal		9
balanceEmPmR	substract global mean of EmPmR at every time step	16
balancePrintMean	print substracted global means to STDOUT	10
balanceQnet	substract global mean of Qnet at every time step	13
balanceSaltClimRelax	substract global mean effect at every time step	7
balanceThetaClimRelax	substract global mean effect at every time step	7
baseTime	model base time (time origin) = time @ iteration zero	48
bathyFile	File containing bathymetry. If not defined bathymetry	27
bbl_etaFile		6
bbl_hvel		9
bbl_initEta	default initial thickness of BBL (m)	13
BBL_PARM01		2
bbl_saltFile		6
bbl_thetaFile		6
bbl_wvel	default vertical entrainment velocity (m/s)	6
beta	df/dy ( s^-1.m^-1 )	22
beta_AB	Adams-Bashforth-3 secondary factor	36
BIOTIC_PARMS		4
BL79LatVary	polarwise of this latitude diffKrBL79 is applied with	6
blankList	List of Blank-Tiles (non active)	15
bling_alpha_photo2dFile		6
bling_atmospFile	file name of atmospheric pressure	4
BLING_FORCING		2
bling_forcingCycle	periodic forcing parameter for biogeochemistry	4
bling_forcingPeriod	period of forcing for biogeochemistry (seconds)	4
bling_gamma_POM2dFile		6
bling_iceFile	file name of sea ice fraction	4
bling_ironFile	file name of aeolian iron flux	4
bling_k_Fe2dFile		6
bling_k_Fe_diaz2dFile		6
bling_Pc_2d_diazFile		6
bling_Pc_2dFile		6
bling_pCO2	Atmospheric pCO2 to be read in data.bling	5
bling_PdiazFile		2
bling_phi_DOM2dFile		6
bling_phi_lg2dFile		6
bling_phi_sm2dFile		6
bling_plgFile	file name of init lg phyto biomass	6
bling_psmFile	file name of init small phyto biomass	6
bling_silicaFile	file name of surface silica	4
bling_windFile	file name of wind speeds	4
bling_wsink0_2dFile		6
blk_nIter	Number of iterations to find turbulent transfer coeff.	9
blk_taveFreq	time-average output frequency [s]	7
bMeltCoef	base-melting heat transfer coefficient	6
bottomdrag_errfile		8
bottomDragLinear	Linear bottom-drag coefficient (units of [r]/s)	14
bottomDragQuadratic	Quadratic bottom-drag coefficient (units of [r]/m)	20
bottomVisc_pCell	account for partial-cell in bottom visc. (no-slip BC)	11
bpbarfile		10
bpdatfile		10
bperrfile		9
bpstartdate1		7
bpstartdate2		7
BULKF_CONST		2
BULKF_PARM01		2
BULKF_PARM02		2
buoyancyRelation	Flag used to indicate which relation to use to	37
BVSQcon		8
C A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
C_basal_fric_const		9
ca_remin_depth	CaCO3 remineralization lengthscale	5
cAdjFreq	Frequency of convective adjustment	19
CAL_NML		1
calcMeanVertShear	calculate the mean (@ grid-cell center) of vertical	6
calcWindStress	True to calculate Wind-Stress from surface wind	6
calendarDumps	moved to package cal (calendar)	9
CatoN	Calcium to nitrogen uptake by small phyto	5
cDalton	coefficient used to evaluate Dalton number (for Evap)	10
cdalton	coefficient used to evaluate the Dalton number	7
CDL		6
cDrag_1		5
cdrag_1		18
cDrag_2		5
cdrag_2		18
cDrag_3		5
cdrag_3		18
CDS		7
cekman		6
celsius2K	convert centigrade (Celsius) degree to Kelvin	40
cen2kel	conversion of deg. Centigrade to Kelvin	14
CFC_atmospFile	file name of atmospheric pressure	10
CFC_FORCING		2
CFC_forcingCycle	periodic-cycle freq for CFC forcing (seconds)	12
CFC_forcingPeriod	record spacing time for CFC forcing (seconds)	6
CFC_iceFile	file name of seaice fraction	11
CFC_windFile	file name of wind speeds	12
CFIX		12
cg2dChkResFreq	Frequency with which to check residual	5
cg2dMaxIters	Maximum number of iterations in the	7
cg2dpcOffDFac	Averaging weight for preconditioner off-diagonal.	11
cg2dPreCondFreq	Frequency for updating cg2d preconditioner	7
cg2dTargetResidual		7
cg2dTargetResWunit		7
cg2dUseMinResSol	=0 : use last-iteration/converged solution	12
cg3dChkResFreq	Frequency with which to check residual	4
cg3dMaxIters	Maximum number of iterations in the	5
cg3dTargetResidual		8
cheap_clFile		9
cheap_dlwFile		9
cheap_hFile		11
cheap_pr1	precipitation time constant	5
cheap_pr2	precipitation time constant	5
cheap_prFile		9
cheap_tauRelax	main relaxation time-scale (in sec) for atm T & Q	8
cheap_tauRelaxOce	relaxation time-scale (in sec) for atm T & Q,	8
CHEAPAML_CONST		2
cheapaml_h		7
cheapaml_kdiff		8
cheapaml_mask_width		5
cheapaml_ntim		7
CHEAPAML_PARM01		2
CHEAPAML_PARM02		2
cheapaml_taurelax		8
cheapaml_taurelaxocean		7
cheapamlXperiodic	domain (including land) is periodic in X dir	23
cheapamlYperiodic	domain (including land) is periodic in Y dir	22
cheapMaskFile		13
checkIniSalt	check for points with identically zero initial salinity	6
checkIniTemp	check for points with identically zero initial Pot.Temp.	7
chkPtFreq	Frequency of rolling check pointing ( s ).	13
CHL	chlorophyll climatology [mg/m3]	13
chl_min	minimum chlorophyll concentration [ug kg-1]	6
CHS	heat exchange coefficient over sea	17
climsice		4
climsss_exfremo_intercept		5
climsss_exfremo_slope		5
climsss_interpMethod		8
climsss_lat0		7
climsss_lat_inc		7
climsss_lon0		7
climsss_lon_inc		8
climsss_nlat		8
climsss_nlon		8
climsssconst		5
climsssfile		14
climsssperiod		10
climsssRepCycle		6
climsssstartdate1		5
climsssstartdate2		5
climsssStartTime		7
climsssTauRelax		6
climsst		17
climsst_exfremo_intercept		5
climsst_exfremo_slope		5
climsst_interpMethod		8
climsst_lat0		7
climsst_lat_inc		7
climsst_lon0		7
climsst_lon_inc		8
climsst_nlat		8
climsst_nlon		8
climsstconst		5
climsstfile		14
climsstperiod		10
climsstRepCycle		6
climsststartdate1		5
climsststartdate2		5
climsstStartTime		7
climsstTauRelax		6
climtempfreeze		7
climustr_exfremo_intercept		5
climustr_exfremo_slope		5
climustr_interpMethod		8
climustr_lat0		7
climustr_lat_inc		7
climustr_lon0		7
climustr_lon_inc		8
climustr_nlat		9
climustr_nlon		8
climustrconst		5
climustrfile		12
climustrperiod		10
climustrRepCycle		5
climustrstartdate1		5
climustrstartdate2		5
climustrStartTime		7
climustrTauRelax		4
climvstr_exfremo_intercept		5
climvstr_exfremo_slope		5
climvstr_interpMethod		8
climvstr_lat0		7
climvstr_lat_inc		7
climvstr_lon0		7
climvstr_lon_inc		8
climvstr_nlat		8
climvstr_nlon		8
climvstrconst		5
climvstrfile		12
climvstrperiod		10
climvstrRepCycle		5
climvstrstartdate1		5
climvstrstartdate2		5
climvstrStartTime		7
climvstrTauRelax		4
CloudFile		7
CMAX		42
cmonob		6
conam		6
conas		6
conc1		8
conc2		6
conc3		6
concm		6
concs		8
concv		6
conservcycle		3
convertFW2Salt	salinity, used to convert Fresh-Water Flux to Salt Flux	36
ConvFile		10
coord		2
cosPower	Power of cosine of latitude to multiply viscosity	7
cost_ice_flag		12
cost_nml		2
costIceEnd1		7
costIceEnd2		6
costIceStart1		5
costIceStart2		5
costname		16
costTranspDataFile		10
COUPLE_PARM		2
COUPLER_PARAMS		2
cpAir	specific heat of air [J/kg/K]	6
cpair		11
cpIce	specific heat of fresh ice [J/kg/K]	23
CPL_ATM_PARAM		2
cpl_atmSendFrq	Frequency^-1 for sending data to coupler (s)	8
cpl_earlyExpImpCall	retired; always call coupler early in call sequence	8
cpl_exchange1W_sIce	controls 1-way exchange of seaice (step fwd in ATM)	21
cpl_exchange2W_sIce	controls 2-way exchange of ThSIce variables	30
cpl_exchange_DIC	controls exchange of DIC variables	26
cpl_exchange_RunOff	controls exchange of RunOff fields	19
cpl_exchange_SaltPl	controls exchange of Salt-Plume fields	17
CPL_OCN_PARAM		2
cpl_oldPickup	restart from an old pickup (= until checkpoint 59h)	6
cpl_sequential	=0/1 : selects Synchronous/Sequential Coupling	10
cpl_snapshot_mnc		6
cpl_taveFreq	Frequency^-1 for time-Aver. output (s)	8
cpl_timeave_mnc		8
cpWater	specific heat of water [J/kg/K]	10
CriterionType		8
cstanton_1		9
cstanton_2		9
cStantonS	coefficients used to evaluate Stanton number (for	7
cStantonU		7
cstar		10
CTDAY		6
ctdsclimfile		6
ctdsfile		8
ctdtclimfile		6
ctdtfile		8
CtoN	Carbon to nitrogen ratio in organic matter	19
CTRL_NML		1
ctrl_nml		3
ctrl_nml_genarr		2
CTRL_PACKNAMES		1
ctrl_packnames		3
ctrlname		20
ctrlSmoothCorrel2D	use pkg/smooth correlation operator (incl. smoother) for 2D controls (Weaver, Courtier 01)	23
ctrlSmoothCorrel3D	use pkg/smooth correlation operator (incl. smoother) for 3D controls (Weaver, Courtier 01)	14
ctrlUseGen	use generic control approach rather than old codes from pkg/ecco	34
curmtrufile		6
curmtrvfile		6
cvapor_exp		6
cvapor_exp_ice		6
cvapor_fac		6
cvapor_fac_ice		6
cvelTimeScale		6
D A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
data_errfile		10
dB_dz		8
debugLevel	controls printing of algorithm intermediate results	174
debugMode	controls printing of debug msg (sequence of S/R calls).	413
deepAtmosphere	deep model (drop the shallow-atmosphere approximation)	10
delP	Vertical grid spacing ( Pa ).	5
delR	Vertical grid spacing ( units of r ).	32
delRc	Vertical grid spacing between cell centers (r unit).	13
delRcFile	File containing vertical grid spacing delRc (1.D array)	9
delRFile	File containing vertical grid spacing delR (1.D array)	9
deltaT	time-step	117
deltaTClock	Timestep used as model clock . This determines the	259
deltaTFreeSurf	Timestep for free-surface equation ( s )	38
deltaTMom	Timestep for momemtum equations ( s )	78
deltaToffline		9
deltaTrbcs	time step used to compute iteration numbers for singleTimeFiles	5
deltaTtracer	Timestep for tracer equations ( s )	22
delX	Separation between cell faces (m) or (deg), depending	23
delXFile	File containing X-spacing grid definition (1.D array)	9
delY		27
delYFile	File containing Y-spacing grid definition (1.D array)	9
delZ	Vertical grid spacing ( m ).	10
delZexp		9
dhSnowLin	half slope of linear distribution of snow thickness within	8
diag_mnc		16
diag_pickup_read		9
diag_pickup_read_mnc		8
diag_pickup_write		8
diag_pickup_write_mnc		8
DIAG_STATIS_PARMS		2
diagCG_maxIters	max number of iterations in diag_cg2d solver	6
diagCG_pcOffDFac	diag_cg2d preconditioner off-diagonal factor	7
diagCG_prtResFrq	frequency for printing residual in CG iterations	5
diagCG_resTarget	residual target for diag_cg2d solver (no units)	8
diagFreq	Frequency with which model writes diagnostic output	23
diagMdsDir	directory where diagnostics will be written when using mds	18
diagMdsDirCreate	system call to mkdir to create diagMdsDir	6
DIAGNOSTICS_LIST		1
diagSt_mnc		10
diagSt_regMaskFile		11
DIC_atmospFile	file name of atmospheric pressure	9
DIC_chlaFile	file name of chlorophyll climatology	8
DIC_FORCING		2
DIC_forcingCycle	periodic forcing parameter specific for dic (seconds)	7
DIC_forcingPeriod	periodic forcing parameter specific for dic (seconds)	6
DIC_iceFile	file name of seaice fraction	9
dic_int1		17
dic_int2		6
dic_int3		9
dic_int4		9
DIC_ironFile	file name of aeolian iron flux	9
DIC_parFile	file name of photosynthetically available radiation (PAR)	9
dic_pCO2	Atmospheric pCO2 to be rad in data.dic	11
DIC_silicaFile	file name of surface silica	13
DIC_windFile	file name of wind speeds	9
DIFF1	parameter used in advect.F	13
diffK4S	Biharmonic diffusion coeff. for mixing of	8
diffK4T	Biharmonic diffusion coeff. for mixing of	7
diffKhS	Laplacian diffusion coeff. for mixing of	8
diffKhT	Laplacian diffusion coeff. for mixing of	7
diffKpS	Laplacian diffusion coeff. for mixing of salt vertically ( Pa^2/s )	5
diffKpT	Laplacian diffusion coeff. for mixing of heat vertically ( Pa^2/s )	5
diffKr4S	vertical profile of Biharmonic diffusion coeff.	8
diffKr4T	vertical profile of Biharmonic diffusion coeff.	8
diffkr_errfile		8
diffKrBL79deep	T/S deep diffusivity (m^2/s) Bryan and Lewis, 1979	7
diffKrBL79Ho	depth offset for arctan fn (m) Bryan and Lewis, 1979	7
diffKrBL79scl	depth scale for arctan fn (m) Bryan and Lewis, 1979	7
diffKrBL79surf	T/S surface diffusivity (m^2/s) Bryan and Lewis, 1979	8
diffKrBLEQdeep	same as diffKrBL79deep but at Equator	7
diffKrBLEQHo	same as diffKrBL79Ho but at Equator	7
diffKrBLEQscl	same as diffKrBL79scl but at Equator	7
diffKrBLEQsurf	same as diffKrBL79surf but at Equator	8
diffKrFile	File containing 3D specification of vertical diffusivity	8
diffKrNrS	vertical profile of Laplacian diffusion coeff.	30
diffKrNrT	vertical profile of Laplacian diffusion coeff.	10
diffKrS		12
diffKrT		11
diffKsnow	thermal conductivity of snow (W/m/K)	6
diffKzS	Laplacian diffusion coeff. for mixing of salt vertically ( m^2/s )	5
diffKzT	Laplacian diffusion coeff. for mixing of heat vertically ( m^2/s )	5
difm0		6
difmcon		6
difs0		6
difscon		6
dift0		6
diftcon		6
dimensions		3
dimsFacets	facet pair of dimensions (n1x,n1y,n2x,n2y ...)	6
do_virtual		5
doAB_onGtGs	if the Adams-Bashforth time stepping is used, always	7
doAdmtlmBypassAD		6
doInitXX	at iter 0 only, set ctrls to 0 and write to xx*000.data	9
doMainPack	pack adxx*data files into ecco_cost_* file (usually for optim.x)	8
doMainUnpack	unpack ecco_ctrl_* file (usually from optim.x) into xx_*data files	9
doPackDiag	output diag_pack*/diag_unpack* files during ctrl_pack/ctrl_unpack	38
DOPfraction	fraction of new production going to DOP	13
doResetHFactors	Do reset thickness factors @ beginning of each time-step	8
doSinglePrecTapelev	reduce precision of ad tape files to float32 (only used in pkg/autodiff ...)	8
doZscalePack		8
doZscaleUnpack		6
dQdTFile		3
DRHLSC		6
dRhoSmall	parameter for mixed-layer diagnostic	7
dsfmax		6
dsolmn	Solar variation at Northern boundary	4
dsolms	Solar variation at Southern boundary	4
dtatm		14
dtcouple		18
DTHETA	Potential temp. gradient for stability correction	31
dtocn		12
dTstab	potential temp. increment for stability function derivative	26
dTtracerLev	Timestep for tracer equations ( s ), function of level k	84
dumpAdByRec		101
dumpAdVarExch	control ad-variables exchange before dumping output	17
dumpAtLast	always write time-ave (freq>0) diagnostics at the end of the run	9
dumpFreq	Frequency with which model state is written to	29
dumpInitAndLast	dumps model state to files at Initial (nIter0) Target residual for cg2d solver; no unit (RHS normalisation) Target residual for cg2d solver; W unit (No RHS normalisation) Target residual for cg3d solver.	13
DWNSLP_drFlow		6
DWNSLP_PARM01		2
DWNSLP_rec_mu	reciprol friction parameter (unit = time scale [s])	6
DWNSLP_slope	fixed slope (=0 => use the local slope)	8
dxSpacing	Default spacing in X and Y. Units are that of coordinate system i.e. cartesian => metres s. polar => degrees	6
dySpacing	Default spacing in X and Y. Units are that of coordinate system i.e. cartesian => metres s. polar => degrees	6
E A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
EBM_PARM01		2
ecco_cost_nml		2
ecco_gencost_nml		2
eddyPsiXFile	File containing zonal Eddy streamfunction data	6
eddyPsiYFile	File containing meridional Eddy streamfunction data	6
edtau_errfile		8
EEPARMS		2
EMISFC		11
EmPFile		6
empmr_off		4
EmPmRfile	File containing surface fresh water flux	14
endTime	Ending time for this integration ( s ).	37
endYear		7
ENTMAX		6
ENTRAINMENT_RATE		8
eosType	choose the equation of state:	21
eps		15
eps_glen_min		7
eps_u_min		6
epsAB_CD	Adams-Bashforth-2 stabilizing weight used in CD scheme	9
epsf		7
epsg		20
epsilon		23
epsln	a very small number	54
EPSLW		6
EPSSW		7
epsx		23
ers_errfile		10
ersfile		10
ersintercept		7
ersperiod		8
ersslope		7
ersstartdate1		7
ersstartdate2		7
ersTimeMaskFile		10
etan0errfile		8
evap_errfile		8
evap_exfremo_intercept		5
evap_exfremo_slope		5
evap_interpMethod		8
evap_lat0		7
evap_lat_inc		7
evap_lon0		7
evap_lon_inc		8
evap_nlat		8
evap_nlon		8
evapconst		5
evapFile		6
evapfile		12
evapperiod		8
evapRepCycle		6
evapstartdate1		5
evapstartdate2		5
evapStartTime		7
exactConserv	Set to true to conserve exactly the total Volume	38
exf_albedo	Sea-water albedo	9
exf_debugLev	select message printing to STDOUT (e.g., when read rec)	25
exf_iceCd	drag coefficient over sea-ice (fixed)	5
exf_iceCe	transfert coeff. over sea-ice, for Evaporation (fixed)	7
exf_iceCh	transfert coeff. over sea-ice, for Sens.Heating (fixed)	9
exf_inscal_apressure		6
exf_inscal_aqh		6
exf_inscal_areamask		6
exf_inscal_atemp		6
exf_inscal_climsss		6
exf_inscal_climsst		6
exf_inscal_climustr		6
exf_inscal_climvstr		6
exf_inscal_evap		6
exf_inscal_hflux		6
exf_inscal_hl		6
exf_inscal_hs		6
exf_inscal_lwdown		6
exf_inscal_lwflux		6
exf_inscal_precip		6
exf_inscal_runoff		6
exf_inscal_runoftemp		6
exf_inscal_saltflx		6
exf_inscal_sflux		6
exf_inscal_snowprecip		6
exf_inscal_sss		2
exf_inscal_sst		2
exf_inscal_swdown		6
exf_inscal_swflux		6
exf_inscal_tidePot		6
exf_inscal_ustress		6
exf_inscal_uwind		6
exf_inscal_vstress		6
exf_inscal_vwind		6
exf_inscal_wspeed		6
exf_iprec		20
exf_iprec_obcs		14
exf_monFreq	Monitor Frequency (s) for EXF	7
EXF_NML_01		2
EXF_NML_02		2
EXF_NML_03		2
EXF_NML_04		2
EXF_NML_OBCS		2
exf_offset_atemp	input air temperature offset (for conversion from C to K, if needed)	5
exf_output_interp	output directly interpolation result (before	9
exf_outscal_apressure		5
exf_outscal_areamask		5
exf_outscal_hflux		6
exf_outscal_sflux		6
exf_outscal_sss		5
exf_outscal_sst		5
exf_outscal_swflux		5
exf_outscal_tidePot		5
exf_outscal_ustress		6
exf_outscal_vstress		6
exf_scal_BulkCdn		8
exf_verbose		4
exf_yftype		4
expMatrixWriteTime		5
expnam		4
externForcingCycle	Is the repeat time of the forcing (eg. 1 year)	25
externForcingCycle_cheap		5
externForcingPeriod	Is the period of which forcing varies (eg. 1 month)	20
externForcingPeriod_cheap		5
F A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
f0	Reference coriolis parameter ( 1/s )	27
facetEdgeLink	Face-Edge connectivity map:	5
FeIntSec	Sediment Fe flux, intersect value in:	6
fesedflux_pcm	ratio of sediment iron to sinking organic matter	6
FetoC_sed	Fe:P in sediments	5
FetoN_max	Maximum Fe:N uptake ratio	5
FetoN_min	Minimum Fe:N uptake ratio	6
FHDRAG		6
FHUM0		7
fields	List Output Fields	4
fileFlags		4
fileName	List Output Filename	34
fileName1		4
fileName2		4
fileName3		4
fileName4		4
fileName5		4
fizhi_list		2
fizhi_mnc_read_pickup		5
fizhi_mnc_write_pickup		4
flamb	latent heat of evaporation [J/kg]	8
flami	latent heat of melting of pure ice [J/kg]	9
floats		3
flow_dir		4
flt_deltaT	time-step to step forward floats (in flt_runga2.F)	24
flt_file	name of the file containing the initial positions.	5
flt_int_prof	period between float vertical profiles, in s	7
flt_int_traj	period between storing model state at float position, in s	7
FLT_Iter0	timestep number when float are initialized	8
FLT_NML		2
flt_noise	range of noise added to the velocity component	40
flt_selectProfOutp	select which var. to output along profiles	10
flt_selectTrajOutp	select which var. to output along trajectories	9
flux_bdry_val_EAST		6
flux_bdry_val_NORTH		6
flux_bdry_val_SOUTH		6
flux_bdry_val_WEST		6
FluxFormula		17
fmin		24
fName	base name for file to read	424
forcing_In_AB	flag to put all forcings (Temp,Salt,Tracers,Momentum) contribution in (or out of) Adams-Bashforth time stepping.	5
forcingPrecond		64
fPrime	Second Coriolis parameter ( 1/s ), related to Y-component	8
fracEnFreez	fraction of energy going to lateral freezing (vs height increase)	9
fracEnMelt	fraction of energy going to lateral melting (vs height decrease)	12
FRACTIONAL_AREA		8
freefemax	max solubility of free iron (mol/m3)	7
freeSurfFac	Parameter to turn implicit free surface term on or off	25
frequency	Frequency (in s) of Output (ouput every frequency second)	10
FSTAB	Amplitude of stability correction (fraction)	14
FTEMP0		7
FWIND0	ratio of near-sfc wind to lowest-level wind	12
G A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
gamma_blk	adiabatic lapse rate	29
gamma_DON	Decay timescale of DON	6
gamma_DOP	Decay timescale of DOP	6
gamma_irr_mem	Photoadaptation time scale	5
gamma_POM		5
gasR	gas constant	6
gBaro	Accel. due to gravity used in barotropic equation ( m/s^2 )	9
gchem_ForcingCycle	periodic forcing parameter specific for gchem (seconds)	4
gchem_ForcingPeriod	periodic forcing parameter specific for gchem (seconds)	4
gchem_int1		4
gchem_int2		4
gchem_int3		4
gchem_int4		4
gchem_int5		4
GCHEM_PARM01		2
gchem_rl1		4
gchem_rl2		4
gchem_rl3		4
gchem_rl4		4
gchem_rl5		4
genarr2dPrecond		6
genarr3dPrecond		4
gencost_avgperiod		46
gencost_barfile		114
gencost_datafile		35
gencost_enddate1		6
gencost_enddate2		5
gencost_errfile		43
gencost_is1d		7
gencost_is3d		11
gencost_itracer		7
gencost_mask		25
gencost_msk_is3d		10
gencost_name		94
gencost_nrecperiod		5
gencost_outputlevel		25
gencost_posproc		11
gencost_posproc_c		12
gencost_posproc_i		12
gencost_posproc_r		5
gencost_preproc		11
gencost_preproc_c		7
gencost_preproc_i		7
gencost_preproc_r		7
gencost_scalefile		8
gencost_smooth2Ddiffnbt		5
gencost_spmax		9
gencost_spmin		10
gencost_spzero		9
gencost_startdate1		9
gencost_startdate2		6
gencost_timevaryweight		7
gencost_wei1d		9
gentim2dPrecond		6
geoid_covariancefile		6
geoid_errfile		8
geothermalFile		7
gfo_errfile		10
gfofile		10
gfointercept		7
gfoperiod		8
gfoslope		7
gfostartdate1		7
gfostartdate2		7
gfoTimeMaskFile		10
GGL90_dirichlet		7
GGL90_PARM01		2
GGL90_PARM02		2
GGL90alpha		6
GGL90ceps		7
GGL90ck		6
GGL90diffMax		7
GGL90diffTKEh		12
GGL90dumpFreq		6
GGL90m2		6
GGL90mixingLengthMin		14
GGL90mixingMaps		5
GGL90taveFreq		7
GGL90TKEbottom		9
GGL90TKEFile		8
GGL90TKEmin		11
GGL90TKEsurfMin		6
GGL90viscMax		8
GGL90writeState		6
globalFiles	Selects between global and tiled files.	26
GM_AdvForm	use Advective Form (instead of Skew-Flux form)	31
GM_AdvSeparate	do separately advection by Eulerian and Bolus velocity	13
GM_background_K	Thickness diffusivity [m^2/s] (GM bolus transport)	15
GM_background_K3dFile	input file for 3.D GM_background_K	6
GM_bol1dFile	input file for 1.D vert. scaling of Thickness diffusivity	8
GM_bol2dFile	input file for 2.D horiz scaling of Thickness diffusivity	8
GM_BVP_cMin	minimum value for wave speed parameter c in BVP [m/s]	6
GM_BVP_ModeNumber		4
GM_facTrL2dz	minimum Trans. Layer Thick. as a factor of local dz	7
GM_facTrL2ML	maximum Trans. Layer Thick. as a factor of Mix-Layer Depth	6
GM_InMomAsStress	apply GM as a stress in momentum Eq.	22
GM_iso1dFile	input file for 1.D vert. scaling of Isopycnal diffusivity	9
GM_iso2dFile	input file for 2.D horiz scaling of Isopycnal diffusivity	9
GM_isopycK	Isopycnal diffusivity [m^2/s] (Redi-tensor)	19
GM_isopycK3dFile	input file for 3.D GM_isopycK	6
GM_K3D_b1	an empirically determined constant of O(1)	5
GM_K3D_beta_eq_0	Ignores the beta term when calculating grad(q)	5
GM_K3D_constK	Constant diffusivity to use when GM_useK3D=.TRUE. and	7
GM_K3D_constRedi	Imposes a constant K for the Redi isoneutral diffusivity	5
GM_K3D_EadyMaxDepth	lower depth for Eady calculation	5
GM_K3D_EadyMinDepth	upper depth for Eady calculation	5
GM_K3D_gamma	mixing efficiency for 3D eddy diffusivity [-]	5
GM_K3D_Lambda		5
GM_K3D_maxC		6
GM_K3D_maxRenorm	maximum value for the renormalisation factor	5
GM_K3D_minCori	minimum value for f (to stop things blowing up near the equator)	8
GM_K3D_minN2	minimum value for the square of the buoyancy frequency	9
GM_K3D_minRenorm	minimum value for the renormalisation factor	5
GM_K3D_Rmax	Upper bound on the length scale used for calculating urms	5
GM_K3D_Rmin	Lower bound on the length scale used for calculating the eddy radius	5
GM_K3D_smallK		7
GM_K3D_smooth	Expand PV closure in terms of baroclinic modes (=.FALSE. for debugging only!)	7
GM_K3D_surfK	Imposes a constant K in the surface layer	6
GM_K3D_surfMinDepth	minimum value for the depth of the surface layer	5
GM_K3D_ThickSheet	Use a thick PV sheet	6
GM_K3D_use_constK	Imposes a constant K for the eddy transport	7
GM_K3D_vecFreq	Frequency at which to update the baroclinic modes	5
GM_Kmin_horiz	minimum horizontal diffusivity [m^2/s]	7
GM_maxK3D	Upper bound on the diffusivity	5
GM_maxSlope	maximum slope (tapering/clipping) [-]	32
GM_maxTransLay	maximum Trans. Layer Thick. [m]	6
GM_MNC		10
GM_PARM01		2
GM_Scrit		10
GM_Sd		10
GM_slopeSqCutoff	slope^2 cut-off value	14
GM_Small_Number	epsilon used in computing the slope	21
GM_taper_scheme	select which tapering/clipping scheme to use	30
GM_UseBVP		6
GM_useK3D	use the 3 dimensional calculation for K	14
GM_useSubMeso	use parameterization of mixed layer (Sub-Mesoscale) eddies	9
GM_Visbeck_alpha		18
GM_Visbeck_depth		8
GM_Visbeck_length		8
GM_Visbeck_maxSlope		9
GM_Visbeck_maxVal_K		5
GM_Visbeck_minDepth		5
GM_Visbeck_minVal_K		5
GMwxFile		11
GMwyFile		11
GMwzFile		10
gravity	Acceleration due to constant gravity ( m/s^2 )	204
gravity_mks	gravitational acceleration [m/s^2]	7
gravityFile	File containing gravity vertical profile (1.D)	12
gravitySign	indicates the direction of gravity relative to R direction	26
grdchk_eps		10
grdchk_nml		2
grdchkvarindex		271
grdchkwhichproc		34
groundAtK1	put the surface(k=1) at the ground (replaced by usingPCoords)	4
H A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
hAlbIce	ice thickness for albedo transition: thin/thick ice albedo	6
hAlbSnow	snow thickness for albedo transition: snow/ground	12
hbf		7
HDRAG		6
HeatCapacity_Cp		72
HeffFile	File containing initial sea-ice thickness	7
hFacInf	Threshold (inf and sup) for fraction size of surface cell	16
hFacMin	Minimum fraction size of a cell (affects hFacC etc...)	9
hFacMinDp	Minimum dimensional size of a cell (affects hFacC etc..., Pa)	6
hFacMinDr	Minimum dimensional size of a cell (-> hFacC etc..., r units)	16
hFacMinDz	Minimum dimensional size of a cell (affects hFacC etc..., m)	6
hFacSup		7
hflux_errfile		8
hflux_exfremo_intercept		6
hflux_exfremo_slope		6
hflux_interpMethod		8
hflux_lat0		7
hflux_lat_inc		7
hflux_lon0		7
hflux_lon_inc		8
hflux_nlat		8
hflux_nlon		8
hfluxconst		5
hfluxfile		13
HFluxFile		5
hfluxmeanbarfile		10
hfluxperiod		8
hfluxRepCycle		6
hfluxstartdate1		5
hfluxstartdate2		5
hfluxStartTime		7
hIceMin	Minimum ice thickness [m]	14
hiceMin		4
highOrderVorticity	use 3rd/4th order interp. of vorticity (V.I., advection)	21
hiMax	Maximum ice thickness [m]	11
hl_const		5
hl_exfremo_intercept		5
hl_exfremo_slope		5
hl_file		12
hl_interpMethod		8
hl_lat0		7
hl_lat_inc		7
hl_lon0		7
hl_lon_inc		8
hl_nlat		8
hl_nlon		8
hl_period		8
hl_RepCycle		6
hl_startdate1		5
hl_startdate2		5
hl_StartTime		7
hMixCriteria	criteria for mixed-layer diagnostic	11
hMixSmooth	Smoothing parameter for mixed-layer diag (default=0=no smoothing)	9
hMxL_default	default value for ocean MixLayer thickness [m]	6
hNewIceMax	new ice maximum thickness [m]	8
hNewSnowAge	new snow thickness that refreshes snow-age (by 1/e)	12
HO	AKA lead closing parameter , demarcation thickness	7
HO_south	Southern Ocean HO	8
horizGridFile	File containing horizontal-grid definition	7
Hrelaxobcsbound		8
Hrelaxobcsinner		8
hs_const		5
hs_exfremo_intercept		5
hs_exfremo_slope		5
hs_file		12
hs_interpMethod		8
hs_lat0		7
hs_lat_inc		7
hs_lon0		7
hs_lon_inc		8
hs_nlat		8
hs_nlon		8
hs_period		8
hs_RepCycle		6
hs_startdate1		5
hs_startdate2		5
hs_StartTime		7
HsaltFile	File containing initial sea ice salt content	7
hsMax	Maximum snow thickness [m]	8
HsnowFile	File containing initial snow thickness	7
hSnowWetness	snow depth (m) corresponding to maximum wetness	9
ht	height of mean temperature	21
hThickIce	ice height below which fracEnMelt/Freez are applied [m]	13
hThinIce	ice height above which fracEnMelt/Freez are applied [m]	14
HtoC		6
hu	height of mean wind	17
humid_fac	dry-air - water-vapor molecular mass ratio (minus one)	29
hybSigmFile	File containing hybrid-sigma vertical coord. coeff. (2x 1.D)	11
hydrogSaltFile	File containing initial hydrographic data (3-D)	16
hydrogThetaFile	File containing initial hydrographic data (3-D)	23
I A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
i0swFrac	fraction of penetrating solar rad	6
ICE2WATR	ratio of sea ice density to water density	6
ice_emissivity		16
IceAgeTrFile		10
IceFile		5
ICEFRONT_EXF_PARM02		2
ICEFRONT_PARM01		2
ICEFRONTdepthFile		6
ICEFRONTHeatCapacity_Cp		3
ICEFRONTkappa		5
ICEFRONTlatentHeat		9
ICEFRONTlengthFile		6
ICEFRONTthetaSurface		6
iceMaskMax	maximum Ice fraction (=1 for no fractional ice)	9
iceMaskMin	mimimum Ice fraction (=1 for no fractional ice)	16
IDEMIX_diff_max		6
IDEMIX_diff_min		5
IDEMIX_frac_F_b		6
IDEMIX_frac_F_s		6
IDEMIX_gamma		7
IDEMIX_include_GM		6
IDEMIX_include_GM_bottom		6
IDEMIX_jstar		7
IDEMIX_mixing_efficiency		6
IDEMIX_mu0		6
IDEMIX_tau_h		9
IDEMIX_tau_v		6
IDEMIX_tidal_file		7
IDEMIX_wind_file		7
idep		8
iesdatfile		7
ieserrfile		8
iesstartdate1		7
iesstartdate2		7
iestaubarfile		10
iGloPos		6
iGloTile		5
IMAX_TICE	number of iterations for ice surface temp	8
implicDiv2DFlow	parameter of the Crank-Nickelson time stepping :	34
implicitDiffusion	Turns implicit vertical diffusion on	30
implicitFreeSurface	Set to true to use implicit free surface	9
implicitIntGravWave	treat Internal Gravity Wave implicitly	29
implicitNHPress	parameter of the Crank-Nickelson time stepping :	23
implicitViscosity	Turns implicit vertical viscosity on	29
implicSurfPress	parameter of the Crank-Nickelson time stepping :	22
impMatrixWriteTime		5
inAdExact	get an exact adjoint (no approximation)	6
insideOBmaskFile	File to specify Inside OB region mask (zero beyond OB)	8
integr_GeoPot	option to select the way we integrate the geopotential	18
interDiffKr_pCell	account for partial-cell in interior vert. diffusion	8
interViscAr_pCell	account for partial-cell in interior vert. viscosity	8
iprint		32
ivdc_kappa	implicit vertical diffusivity for convection [m^2/s]	26
J A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
jdep		8
JFNKgamma_lin_max		7
JFNKgamma_lin_min	tolerance parameters for linear JFNK solver	5
JFNKgamma_nonlin		5
JFNKres_t	tolerance parameter for FGMRES residual	10
JFNKres_tFac	if set, JFNKres_t=JFNKres_tFac*(initial residual)	11
jGloPos		6
jGloTile		5
K A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
k0	Light attentuation coefficient	14
k_Fe	Dissolved Fe uptake half-saturation constant	5
k_Fe_diaz	Dissolved Fe uptake half-saturation constant for diazotrophs	5
k_FetoN	Half-saturation cellular Fe:N	5
k_NO3	Nitrate uptake half-saturation constant	5
k_O2	Half-saturation constant for aerobic respiration	5
k_PO4	Phosphate uptake half-saturation constant	5
k_PtoN	Half-saturation cellular P:N	5
kapgm_errfile		8
kappa_eppley	Temperature dependence of growth	5
kappa_eppley_diaz	Temperature dependence of growth for diazotrophs	5
kappa_remin	Temperature dependence of remineralization	5
kapredi_errfile		8
kchl	Light attentuation coefficient fct of chlorophyll [m2/mg]	6
KDOPRemin	DOP remineralization rate (1/s) = 1/(6 month)	5
KFE	half saturation fe constant (mol/m3)	6
kFe_eq_lig_Femin	Constant having to do with photodissociation	5
kFe_eq_lig_irr	Iron ligand stability constant	5
kFe_eq_lig_max	Maximum Fe-ligand stability constant	5
kFe_eq_lig_min	Minimum Fe-ligand stability constant	5
kFe_inorg	Inorganic scavenging rate	5
kFe_org	Organic-matter dependent scavenging rate	4
kGloPos		5
kIce	thermal conductivity of pure ice [W/m/K]	10
KL10_PARM01		2
KLdumpFreq		5
KLtaveFreq		6
KLviscMax		6
KLwriteState		5
KPO4	half saturation phosphate constant (mol/m3)	6
KPP_DiffSFile		10
kpp_dumpFreq	KPP dump frequency. (s)	6
kpp_freq	Re-computation frequency for KPP parameters (s)	6
KPP_ghatFile		4
KPP_ghatKFile		10
KPP_ghatUseTotalDiffus		10
KPP_PARM01		2
kpp_taveFreq	KPP time-averaging frequency. (s)	5
KPPmixingMaps		4
KPPuseDoubleDiff	if TRUE, include double diffusive	7
KPPwriteState	if true, write KPP state to file	9
KRemin	remin power law coeff	5
KScav	iron scavenging rate QQ	8
kSnow	thermal conductivity of snow [W/m/K]	7
ksolar	bulk solar abs coeff of sea ice [m^-1]	6
L A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
LAD	time stepping used for sea-ice advection:	4
lambda_0	Carbon-specific phytoplankton mortality rate	9
lambdaSaltFile		10
lambdaThetaFile		10
land_calc_alb	compute albedo of snow over land	6
land_calc_grT	step forward ground Temperature	13
land_calc_grW	step forward soil moiture	11
land_calc_snow	step forward snow thickness	13
land_CpWater	Heat capacity of water (J/kg/K)	14
land_deltaT	land model time-step	33
land_diagFreq	Frequency^-1 for diagnostic output (s)	7
land_dzF	layer thickness	18
land_fractRunOff	fraction of water in excess which run-off (1)	6
land_grdLambda	Thermal conductivity of the ground (W/m/K)	7
land_grT_iniFile	File containing initial ground Temp.	8
land_grW_iniFile	File containing initial ground Water.	9
land_heatCs	Heat capacity of dry soil (J/m3/K)	11
land_hMaxSnow	Maximum snow-thickness (m)	6
land_impl_grT	solve ground Temperature implicitly	13
land_Lfreez	Latent heat of freezing (J/kg)	20
LAND_MODEL_PAR		2
land_mon_mnc		11
land_monFreq	Frequency^-1 for monitor output (s)	7
land_oldPickup	restart from an old pickup (= before checkpoint 52l_pre)	6
LAND_PHYS_PAR		2
land_pickup_read_mnc		11
land_pickup_write_mnc		11
land_rhoLiqW	density of liquid water (kg/m3)	19
land_rhoSnow	density of snow (kg/m3)	14
land_snapshot_mnc		11
land_snow_iniFile	File containing initial snow thickness.	7
land_taveFreq	Frequency^-1 for time-Aver. output (s)	9
land_timeave_mnc		11
land_waterCap	field capacity per meter of soil (1)	12
land_wTauDiff	soil moisture diffusion time scale (s)	6
latBandClimRelax	latitude band where Relaxation to Clim. is applied,	16
LAYER_nb		10
layers_bolus		10
layers_bounds	boundaries of tracer layers	19
layers_diagFreq		5
layers_G	boundaries of tracer layers	5
layers_kref		5
layers_krho		14
layers_name		61
LAYERS_PARM01		2
layers_taveFreq		7
ldry_convection		4
levels	List Output Levels	8
Lfresh	latent heat of melting of pure ice [J/kg]	40
ligand	Ligand concentration	5
ligand_stab	ligand-free iron stability constant (m3/mol)	14
ligand_tot	total free ligand (mol/m3)	12
LimitHblStable	if TRUE (the default), limits the depth of the	6
linFSConserveTr	Set to true to correct source/sink of tracer	14
lit0	half saturation light constant (W/m2)	6
LONGSTEP_PARM01		2
LongwaveFile		7
LS_nIter	number of dynamics time steps between ptracer steps	16
LS_whenToSample	when to sample dynamical fields for the longstep average	10
LSR_ERROR	sets accuracy of LSR solver	11
LSR_mixIniGuess	control mixing of free-drift sol. into LSR initial =0 : nothing; =1 : no mix, but print free-drift =2,4 : mix with (1/local-residual)^2,4 factor	17
Lvap	latent heat of vaporization at 0.oC [J/kg]	11
lwdown_errfile		8
lwdown_exfremo_intercept		5
lwdown_exfremo_slope		5
lwdown_interpMethod		8
lwdown_lat0		7
lwdown_lat_inc		7
lwdown_lon0		7
lwdown_lon_inc		8
lwdown_nlat		8
lwdown_nlon		8
lwdownconst		5
lwdownfile		17
lwdownperiod		8
lwdownRepCycle		6
lwdownstartdate1		5
lwdownstartdate2		5
lwdownStartTime		7
lwet_convection		6
lwflux_errfile		8
lwflux_exfremo_intercept		5
lwflux_exfremo_slope		5
lwflux_interpMethod		8
lwflux_lat0		7
lwflux_lat_inc		7
lwflux_lon0		7
lwflux_lon_inc		8
lwflux_nlat		8
lwflux_nlon		8
lwfluxconst		5
lwfluxfile		17
lwfluxperiod		8
lwfluxRepCycle		6
lwfluxstartdate1		5
lwfluxstartdate2		5
lwfluxStartTime		7
M A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
mapIniPos2Index	convert float initial position to (local) index map	6
maskIniSalt	apply mask to initial salinity	6
maskIniTemp	apply mask to initial Pot.Temp.	6
maskname		5
masstoN		4
MATRIX_PARM01		2
MAX_ABE_ITERATIONS		6
MAX_FRACTIONAL_AREA		6
MAX_HEFF		4
MAX_TICE	maximum ice temperature (deg C)	4
max_x_CFBC_NORTH		5
max_x_CFBC_SOUTH		5
max_x_Dirich_NORTH		6
max_x_Dirich_SOUTH		6
max_x_FluxBdry_NORTH		6
max_x_FluxBdry_SOUTH		6
max_x_noflow_NORTH		6
max_x_noflow_SOUTH		6
max_x_noStress_NORTH		6
max_x_noStress_SOUTH		6
max_y_CFBC_EAST		6
max_y_CFBC_WEST		6
max_y_Dirich_EAST		6
max_y_Dirich_WEST		6
max_y_FluxBdry_EAST		6
max_y_FluxBdry_WEST		6
max_y_noflow_EAST		6
max_y_noflow_WEST		6
max_y_noStress_EAST		6
max_y_noStress_WEST		6
maxLengthPrt1D	maximum length for printing (to Std-Msg-Unit) 1-D array	7
maxNumberPrint	max number of printed Export/Import messages	7
mdsioLocalDir	read-write tiled file from/to this directory name	53
mdtdatfile		11
mdtenddate1		7
mdtenddate2		7
mdtstartdate1		7
mdtstartdate2		7
meridWindFile	File containing meridional wind data	15
metaname		5
metricTerms	Flag which turns metric terms on or off.	12
MIN_ATEMP	minimum air temperature (deg C)	7
MIN_LWDOWN	minimum downward longwave (W/m^2)	7
MIN_TICE	minimum ice temperature (deg C)	6
min_x_CFBC_NORTH		5
min_x_CFBC_SOUTH		5
min_x_Dirich_NORTH		6
min_x_Dirich_SOUTH		6
min_x_FluxBdry_NORTH		6
min_x_FluxBdry_SOUTH		6
min_x_noflow_NORTH		6
min_x_noflow_SOUTH		6
min_x_noStress_NORTH		6
min_x_noStress_SOUTH		6
min_y_CFBC_EAST		6
min_y_CFBC_WEST		6
min_y_Dirich_EAST		6
min_y_Dirich_WEST		6
min_y_FluxBdry_EAST		6
min_y_FluxBdry_WEST		6
min_y_noflow_EAST		6
min_y_noflow_WEST		6
min_y_noStress_EAST		6
min_y_noStress_WEST		6
minKPPhbl	KPPhbl minimum value (m)	8
missing_value	missing value for real-type fields in output file	5
missing_value_int	missing value for integers in output (not used)	3
mixed_layer_bc		4
MNC_01		2
mnc_echo_gvtypes	echo type names (fails on many platforms)	4
mnc_filefreq		6
mnc_indir_str	name of the input directory	5
mnc_max_fsize	maximum file size	4
mnc_outdir_date	use a date string within the output dir name	6
mnc_outdir_num	use a seq. number within the output dir name	5
mnc_outdir_str	name of the output directory	9
mnc_read_bathy		6
mnc_read_salt		5
mnc_read_theta		5
mnc_use_indir	use mnc_indir_str as input filename prefix	4
mnc_use_name_ni0	use nIter0 in all the file names	4
mnc_use_outdir	use mnc_outdir_str as output filename prefix	5
momAdvection	Flag which turns advection of momentum on and off.	19
momDissip_In_AB	if False, put Dissipation tendency contribution	10
momForcing	Flag which turns external forcing of momentum on and off.	15
momForcingOutAB	=1: take momentum forcing contribution	14
momImplVertAdv	Turns on implicit vertical advection for Momentum	14
momPressureForcing	Flag which turns pressure term in momentum equation	14
momStepping	Turns momentum equation time-stepping off	36
momTidalForcing	Flag which turns tidal forcing on and off.	10
momViscosity	Flag which turns momentum friction terms on and off.	33
mon_AdVarExch	control ad-variables exchange before monitor output	8
monitor_mnc		17
monitorFreq		35
monitorSelect	select group of variables to monitor	18
mu_Tf	linear dependance of melting temperature on Salinity [oC/psu]	10
mult_apressure		6
mult_aqh		7
mult_argos		9
mult_argot		9
mult_atemp		7
mult_atl		6
mult_bp		8
mult_ctds		9
mult_ctdsclim		8
mult_ctdt		9
mult_ctdtclim		8
mult_drift		8
mult_ers		7
mult_etan0		8
mult_evap		6
mult_genarr2d		5
mult_genarr3d		5
mult_gencost		6
mult_gentim2d		5
mult_gfo		7
mult_h		8
mult_hflux		8
mult_hfluxmm		8
mult_hmean		8
mult_ice		5
mult_ice_export		5
mult_ies		7
mult_lwdown		7
mult_lwflux		7
mult_precip		7
mult_profiles		6
mult_profiles_mean		5
mult_salt		9
mult_salt0		8
mult_scatx		8
mult_scaty		8
mult_sdrift		8
mult_sflux		8
mult_sfluxmm		8
mult_smrarea		7
mult_smrsss		6
mult_smrsst		6
mult_snowprecip		6
mult_sshv4cost		6
mult_sss		9
mult_sst		10
mult_swdown		7
mult_swflux		7
mult_tauu		8
mult_tauv		8
mult_tdrift		8
mult_temp		9
mult_temp0		8
mult_test		5
mult_thsice		5
mult_tmi		9
mult_tp		7
mult_tracer		5
mult_uvel0		8
mult_uwind		7
mult_vvel0		8
mult_vwind		7
mult_wdrift		7
mult_xbt		9
multEtan		4
multiDimAdvection	Flag that enable multi-dimension advection	9
multSalt		4
multTheta		4
multUvel		4
multVvel		4
mxlMaxFlag		9
mxlSurfFlag		6
MY_PARM01		2
MYdiffMax		6
MYdumpFreq		5
MYhblScale		5
MYMixingMaps		2
myPa_applyTendS		6
myPa_applyTendT		7
myPa_applyTendU		7
myPa_applyTendV		7
myPa_doSwitch1		4
myPa_doSwitch2		4
myPa_index1		5
myPa_index2		4
myPa_MNC		8
myPa_param1		5
myPa_param2		4
myPa_Scal1File		6
myPa_Scal2File		6
myPa_StaV_Cgrid		9
myPa_string1		5
myPa_string2		4
myPa_Surf1File		6
myPa_Surf2File		6
myPa_Tend_Cgrid		9
myPa_VelUFile		7
myPa_VelVFile		7
MYPACKAGE_PARM01		2
MYtaveFreq		6
MYviscMax		6
MYwriteState		8
N A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
n_basal_friction		7
n_glen		14
nbeg		14
nend		10
nEndIter		27
nfunc		20
nh_Am2	scales the non-hydrostatic terms and changes internal scales	9
nhmsbegin		3
nIter0	Start time-step number of for this run	382
nitMaxTsf	maximum Nb of iter to find Surface Temp (Trsf)	8
NO3toN		8
no_slip_bottom	Impose no-slip at bottom boundary.	23
no_slip_shelfice	set slip conditions for shelfice separately,	13
no_slip_sides	Impose no-slip at lateral boundaries.	17
nondimcontrol		6
noNegativeEvap	prevent negative evap (= sea-surface condensation)	6
nonHydrostatic	Using non-hydrostatic algorithm	58
nonlinFreeSurf	option related to non-linear free surface	99
Npower		11
NPSEUDOTIMESTEPS		4
Nr	No. points in Z for full process domain.	5539
nSetRegMskFile		11
nShapS		13
nShapT		14
nShapTrPhys		7
nShapUV		25
nShapUVPhys		10
nstep		7
nstyperelax		2
nsubtime	number of chemistry timesteps per deltaTtracer (default 1)	4
nTimeSteps	Number of timesteps to execute	63
nTimeSteps_l2	Number of inner timesteps to execute per timestep	9
nttyperelax		2
nTx	No. of threads in X and in Y	74
nTy	No. of threads in X and in Y	73
num_m_smooth_sh		4
num_v_smooth_BV		4
num_v_smooth_Ri		6
num_z_smooth_sh		4
numbands		1
numiter		9
nupdate		26
nvars		7
nymdbegin		3
O A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
O2crit	critical oxygen level (mol/m3)	6
O2toN	Oxygen to nitrogen for biological activity	9
OB_Ieast	global index array of eastern open-boundary point	16
OB_Iwest	global index array of western open-boundary point	12
OB_Jnorth	global index array of northern open-boundary point	16
OB_Jsouth	global index array of southern open-boundary point	12
OB_singleIeast	global/uniform Eastern OB position index	6
OB_singleIwest	global/uniform Western OB position index	6
OB_singleJnorth	global/uniform Northern OB position index	6
OB_singleJsouth	global/uniform Southern OB position index	6
OBCS_PARM01		2
OBCS_PARM02		2
OBCS_PARM03		2
OBCS_PARM04		2
OBCS_PARM05		2
OBCS_u1_adv_S	>0: use 1rst O. upwind adv-scheme @ OB (=1: only if outflow)	6
OBCS_u1_adv_T	>0: use 1rst O. upwind adv-scheme @ OB (=1: only if outflow)	6
obcsEperiod		7
obcsErepCycle		6
obcsEstartdate1		6
obcsEstartdate2		6
obcsEstartTime		6
obcsglo		5
obcsNperiod		7
obcsNrepCycle		6
obcsNstartdate1		6
obcsNstartdate2		6
obcsNstartTime		6
obcsSperiod		7
obcsSrepCycle		6
obcsSstartdate1		6
obcsSstartdate2		6
obcsSstartTime		6
obcsWperiod		7
obcsWrepCycle		6
obcsWstartdate1		6
obcsWstartdate2		6
obcsWstartTime		6
OBEaFile		4
OBEAmFile		2
OBEconnectFile		6
OBEetaFile		11
OBEhFile		4
OBEPhFile		2
OBEsFile		10
OBEslFile		4
OBEsnFile		4
OBEtFile		10
OBEuFile		10
OBEuiceFile		4
OBEvFile		10
OBEviceFile		4
OBEwFile		11
OBLIQ	Obliquity (in degree) used with ALLOW_INSOLATION	8
OBNaFile		4
OBNAmFile		2
OBNconnectFile		6
OBNetaFile		11
OBNhFile		4
OBNPhFile		2
OBNsFile		10
OBNslFile		4
OBNsnFile		4
OBNtFile		10
OBNuFile		10
OBNuiceFile		4
OBNvFile		10
OBNviceFile		4
OBNwFile		11
OBSaFile		4
OBSAmFile		2
OBSconnectFile		6
OBSetaFile		11
OBShFile		4
OBSPhFile		2
OBSsFile		10
OBSslFile		4
OBSsnFile		4
OBStFile		10
OBSuFile		10
OBSuiceFile		4
OBSvFile		10
OBSviceFile		4
OBSwFile		11
OBWaFile		4
OBWAmFile		2
OBWconnectFile		6
OBWetaFile		11
OBWhFile		4
OBWPhFile		2
OBWsFile		10
OBWslFile		4
OBWsnFile		4
OBWtFile		10
OBWuFile		10
OBWuiceFile		4
OBWvFile		10
OBWviceFile		4
OBWwFile		11
ocean_deltaT	ocean mixed-layer time-step [s]	12
OCEAN_drag	air-ocean drag coefficient	11
ocean_emissivity		21
OFFLINE_PARM01		2
OFFLINE_PARM02		2
offlineForcingCycle		7
offlineForcingPeriod		9
offlineIter0		29
offlineLoadPrec		6
offlineOffsetIter		4
offlineTimeOffset		7
omega	Angular velocity ( rad/s )	16
OPPS_PARM01		2
OPPSdebugLevel		12
OPPSdumpFreq		4
OPPStaveFreq		6
OPPSwriteState		4
OPTIM		1
optim		3
optimcycle		594
outputTypesInclusive		43
oxic_min	Minimum O2 concentration for aerobic respiration	13
P A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
p0	surface pressure in mb	47
Pa2Atm	Conversion factor for atmospheric pressure pLoad	10
PACKAGES		2
parfrac	fraction of Qsw avail for photosynthesis	13
PARM01		2
PARM01_ATM2D		2
PARM02		2
PARM02_ATM2D		2
PARM03		2
PARM03_ATM2D		2
PARM04		2
PARM04_ATM2D		2
PARM05		2
PARM05_ATM2D		2
Pc_0	Maximum phytoplankton carbon-specific growth rate at 0C	5
Pc_0_diaz	Maximum diazotroph carbon-specific growth rate at 0C	5
pCellMix_delR	thickness criteria for too thin partial-cell	13
pCellMix_diffKr	vertical diffusivity for too thin partial-cell	7
pCellMix_maxFac	maximum enhanced mixing factor for thin partial-cell	11
pCellMix_select	select option to enhance mixing near surface & bottom	15
pCellMix_viscAr	vertical viscosity for too thin partial-cell	9
pChkPtFreq	Frequency of permanent check pointing ( s ).	13
periodicExternalForcing	Set true if forcing is time-dependant	11
periodicExternalForcing_cheap		5
permil	set carbon mol/m3 <---> mol/kg conversion factor	61
PETSC_PRECOND_TYPE		6
PETSC_SOLVER_TYPE		5
phepsi		26
phi_DOM	Fraction of non-sinking production to DOM	5
phi_dvm		7
phi_lg	Fraction of large phytoplankton biomass converted to detritus	5
phi_sm	Fraction of small phytoplankton biomass converted to detritus	5
phiEuler	Euler angle, rotation about original z-axis	7
phiMin	unfortunate variable name ; replaced by ygOrigin	4
pickup_read_mnc	use mnc to read pickups	16
pickup_write_mnc	use mnc to write pickups	17
pickupStrictlyMatch	check and stop if pickup-file do not stricly match	40
pickupSuff	force to start from pickup files (even if nIter0=0)	75
pivotal	Pivotal phytoplankton biomass	7
ploadFile		1
plotLevel	controls printing of field maps ; higher -> more flds	23
PlumeMethod		9
PlumeRadius		8
postSolvTempIter	select flux calculation after surf. temp solver	10
PP81_PARM01		2
PPalpha		8
PPdiffMin		5
PPdumpFreq		5
PPMixingMaps		2
PPnRi		7
PPnu0		6
PPtaveFreq		6
PPviscMax		7
PPviscMin		5
PPwriteState		5
precip_errfile		8
precip_exfremo_intercept		5
precip_exfremo_slope		5
precip_interpMethod		8
precip_lat0		7
precip_lat_inc		7
precip_lon0		7
precip_lon_inc		8
precip_nlat		8
precip_nlon		8
precipconst		5
precipFile		6
precipfile		12
precipperiod		8
precipRepCycle		6
precipstartdate1		5
precipstartdate2		5
precipStartTime		7
preDefTopol	pre-defined Topology selector: = 0 : topology defined from processing data.exch2 ; = 1 : simple, single facet topology; = 2 : customized topology (w2_set_myown_facets) = 3 : 6-face Cube (3 face-dims: nRed, nGreen, nBlue).	15
printMapIncludesZeros	Flag that controls whether character constant	7
printResidualFreq	Frequency for printing residual in CG iterations	19
profiles_nml		2
profilesDir		22
profilesfiles		17
psbarfile		12
psiEuler	Euler angle, rotation about new z-axis	7
psim_fac	coef used in turbulent fluxes calculation [-]	11
PSMIN		8
pSurfInitFile		8
PtoN_max	Maximum P:N uptake ratio	5
PtoN_min	Minimum P:N uptake ratio	6
PTRACERS_addSrelax2EmP	add Salt relaxation to EmP	9
PTRACERS_advScheme		25
PTRACERS_diffK4		6
PTRACERS_diffKh		6
PTRACERS_diffKr		5
PTRACERS_diffKrNr		9
PTRACERS_doAB_onGpTr	if Adams-Bashforth time stepping is used, apply	6
PTRACERS_dumpFreq		9
PTRACERS_EvPrRn	tracer concentration in Rain, Evap & RunOff	39
PTRACERS_ImplVertAdv	use Implicit Vertical Advection for this tracer	11
PTRACERS_initialFile		6
PTRACERS_Iter0	timestep number when tracers are initialized	22
PTRACERS_linFSConserve	apply mean Free-Surf source/sink at surface	7
PTRACERS_long_names		9
PTRACERS_monitor_mnc		12
PTRACERS_monitorFreq		9
PTRACERS_names		22
PTRACERS_numInUse	number of tracers to use	108
PTRACERS_PARM01		2
PTRACERS_pickup_read_mnc		12
PTRACERS_pickup_write_mnc		12
PTRACERS_ref	vertical profile for passive tracers, in	12
PTRACERS_resetFreq	Frequency (s) to reset ptracers to original val	6
PTRACERS_resetPhase	Phase (s) to reset ptracers	5
PTRACERS_snapshot_mnc		11
PTRACERS_startStepFwd	time to start stepping forward this tracer	7
PTRACERS_taveFreq	Frequency with which time-averaged PTRACERS	12
PTRACERS_timeave_mnc		12
PTRACERS_units		10
PTRACERS_useDWNSLP	true if Down-Sloping flow applies to pTracer n	7
PTRACERS_useGMRedi	true if GM-Redi applies to pTracer n	10
PTRACERS_useKPP	true if KPP applies to pTracer n	8
PTRACERS_useRecords	snap-shot output: put all pTracers in one file	7
Q A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
QACL1		8
QACL2		8
QBL		6
qnet_off		4
qnetFile		7
QnetFile		8
QrFile		9
QSMAX		6
qsnow	snow enthalpy [J/kg]	14
quasiHydrostatic	Using non-hydrostatic terms in hydrostatic algorithm	12
R A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
R_CP	stochiometric ratios	8
R_FeP		6
R_NP		6
R_OP	stochiometric ratios	4
radius_fromHorizGrid	sphere Radius of input horiz. grid (Curvilinear Grid)	11
RainFile		7
rainRatioUniform		6
rband		8
RBCS_PARM01		2
RBCS_PARM02		2
rbcsForcingCycle	cycle of rbc data (in seconds)	6
rbcsForcingOffset	model time at beginning of first rbc period	6
rbcsForcingPeriod	period of rbc data (in seconds)	8
rbcsIniter		4
rbcsIter0	singleTimeFile iteration number corresponding to rbcsForcingOffset	6
rbcsSingleTimeFiles	if .TRUE., rbc fields are given 1 file per time labeled by iteration number (see rbcsIter0,deltaTrbcs)	10
rbcsVanishingTime	when rbcsVanishingTime .NE. 0. the relaxation strength reduces linearly to vanish at myTime .EQ. rbcsVanishingTime	6
RC_maxtime_hr		7
RC_maxtime_mi		8
RC_maxtime_sc		7
rCD	CD scheme normalised coupling parameter (= 1 - deltaT/tauCD)	12
readBinaryPrec	Precision used for reading binary files	24
readgrid_mnc	read INI_CURVILINEAR_GRID() info using mnc	5
readStressOnAgrid	read wind-streess located on model-grid, A-grid position	8
readStressOnCgrid	read wind-streess located on model-grid, C-grid position	9
recglo		5
regrid_fbname_in		3
regrid_MDSIO		3
regrid_MNC		3
regrid_ngrids		5
regrid_nout		4
REGRID_PARM01		2
relaxMaskFile	local mask-file name to read from namelist	5
relaxMaskUFile		9
relaxMaskVFile		9
relaxPtracerFile		10
relaxSFile		10
relaxTFile		10
relaxUFile		11
relaxVFile		11
remin_min	Minimum anaerobic respiration rate	6
repeatCycle	number of averaging intervals in 1 cycle	7
repeatPeriod		41
Rgas	gas constant for dry air [J/kg/K]	15
RHBL		6
RHCL1		9
RHCL2		6
RHGRAD		7
RHIL		6
RHLSC		6
rhoA	density of air [kg/m^3]	8
rhoa		22
rhoConst	Vertically constant reference density (Boussinesq)	77
rhoConstFresh	Constant reference density for fresh water (rain)	57
rhoFW	density of fresh water [kg/m^3]	8
rhofw	density of fresh water [kg/m^3]	14
rhoi	density of ice [kg/m^3]	72
rhoIcefront		5
rhonil		9
rhoRefFile	File containing reference density profile rhoRef (1.D)	12
rhos	density of snow [kg/m^3]	36
rhoShelfice		5
rhosw	density of seawater [kg/m^3]	12
Ricr		8
rigidLid	Set to true to use rigid lid	21
Riinfty		7
river_conc_trac	River concentration, bgc tracers	4
rkFac	removed from namelist ; replaced by -rkSign	4
Ro_SeaLevel	origin of the vertical R-coords axis ; replaced by top_Pres or seaLev_Z setting	6
rotateStressOnAgrid	rotate from zonal/meridional components to U/V components	9
rotationPeriod	Rotation period (s) (= 2.pi/omega)	9
roughness_heat		5
roughness_moist		5
roughness_mom		6
Rrho0		7
rSigmaBnd	vertical position (in r-unit) of r/sigma transition (Hybrid-Sigma)	7
rSphere	Radius of sphere for a spherical polar grid ( m ).	59
RUNCLOCK		2
runlength		7
runoff_exfremo_intercept		5
runoff_exfremo_slope		5
runoff_interpMethod		10
runoff_lat0		9
runoff_lat_inc		9
runoff_lon0		9
runoff_lon_inc		10
runoff_nlat		10
runoff_nlon		10
runoffconst		5
RunoffFile	Runoff input file name	13
runoffFile		7
runofffile		13
runOffMapFile	Input file for setting runoffmap	9
runoffMapFile		6
runOffMapSize	Nunber of connected grid points in RunOff-Map	7
runoffperiod		10
runoffRepCycle		7
runoffstartdate1		5
runoffstartdate2		5
runoffStartTime		8
runoftemp_exfremo_intercept		5
runoftemp_exfremo_slope		5
runoftempconst		5
runoftempfile		12
rwSuffixType	controls the format of the mds file suffix.	85
S A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
S_winton	Winton salinity of ice [g/kg]	6
SadournyCoriolis	for backward compatibility	4
salt0errfile		8
salt_addMass	salinity of addMass array	16
salt_EvPrRn	salinity of Rain & Evap.	24
SALT_PLUME_PARM01		2
salt_useDWNSLP	true if Down-Sloping flow applies to salinity	6
saltAdvection	Flag which turns advection of salinity on and off.	14
saltAdvScheme	Salt. Horiz.advection scheme selector	26
saltClimFile	File containing surface salt climataology used	15
saltDiffusion	diffusion of salinity on/off (flag not used)	4
salterrfile		11
SaltFile		3
saltFluxFile	File containing surface salt flux	14
saltflx_exfremo_intercept		5
saltflx_exfremo_slope		5
saltflx_interpMethod		8
saltflx_lat0		7
saltflx_lat_inc		7
saltflx_lon0		7
saltflx_lon_inc		8
saltflx_nlat		8
saltflx_nlon		8
saltflxconst		5
saltflxfile		12
saltflxperiod		8
saltflxRepCycle		6
saltflxstartdate1		5
saltflxstartdate2		5
saltflxStartTime		7
saltForcing	Flag which turns external forcing of salinity on/off	12
saltIce	salinity of ice [g/kg]	11
saltImplVertAdv	Turns on implicit vertical advection for Salinity	14
SaltPlumeCriterion		11
SaltPlumeSouthernOcean		6
saltQsFac	reduction of sat. vapor pressure over salty water	6
saltRelaxFile		9
saltsat	reduction of saturation vapor pressure over salt water	7
saltStepping	Turns salinity equation time-stepping on/off	21
saltVertAdvScheme	Salt. Vert. Advection scheme selector	14
sbarfile		20
sBeta	Linear EOS haline contraction coefficient.	12
sbo_monFreq	SBO monitor frequency (s)	5
SBO_PARM01		2
sbo_taveFreq		4
scale_runoff		5
scalname		6
scatperiod		6
scatstartdate1		8
scatstartdate2		8
scatx_errfile		8
scatxdatfile		8
scaty_errfile		8
scatydatfile		8
SDALB		8
sdatfile		10
SEAICE_2ndOrderBC	apply 2nd order no slip boundary conditions (works	11
SEAICE_abEps		4
SEAICE_ageTracer	use SItracer to trace the age of ice	5
SEAICE_airTurnAngle	turning angles of air-ice interfacial stress	11
SEAICE_area_floor	usually set to 1x10^-5. Specifies a minimun	11
SEAICE_area_max	usually set to 1. Seeting areaMax below 1 specifies	10
SEAICE_area_reg	usually set to 1x10^-5. Specifies a minimun	27
SEAICE_areaGainFormula	selects formula for ice cover gain from open 1=from growth by ATM 2=from predicted growth by ATM	9
SEAICE_areaLossFormula	selects formula for ice cover loss from melt 1=from all but only melt conributions by ATM and OCN 2=from net melt-growth>0 by ATM and OCN 3=from predicted melt by ATM	10
SEAICE_availHeatFrac		11
SEAICE_availHeatFracFrz		5
SEAICE_availHeatTaper		6
SEAICE_cBasalStar		8
SEAICE_cf	ratio of total energy sinks to gravitational sink	6
SEAICE_clamp_salt		5
SEAICE_clamp_theta		5
SEAICE_clipVelocities	clip velocities to +/- 40cm/s	8
SEAICE_cpAir	specific heat of air (J/kg/K)	8
SEAICE_cStar	sea-ice strength paramter C* (def: 20)	10
SEAICE_cutoff_area		5
SEAICE_cutoff_heff		5
SEAICE_dalton	Dalton number (= sensible heat transfer coefficient)	9
SEAICE_deltaMin	small number used to reduce singularities of Delta	12
SEAICE_deltaTdyn	Seaice timestep for dynamic solver (s)	30
SEAICE_deltaTevp	Seaice timestep for EVP solver (s)	16
SEAICE_deltaTtherm	Seaice timestep for thermodynamic equations (s)	92
SEAICE_doOpenWaterGrowth	use open water heat flux directly to grow ice	8
SEAICE_doOpenWaterMelt	use open water heat flux directly to melt ice	7
SEAICE_drag	air-ice drag coefficient	10
SEAICE_drag_south	Southern Ocean SEAICE_drag	11
SEAICE_dryIceAlb	winter albedo	7
SEAICE_dryIceAlb_south	Southern Ocean SEAICE_dryIceAlb	8
SEAICE_drySnowAlb	dry snow albedo	7
SEAICE_drySnowAlb_south	Southern Ocean SEAICE_drySnowAlb	8
SEAICE_dTempFrz_dS	tempFrz = SEAICE_tempFrz0 + salt*SEAICE_dTempFrz_dS	9
SEAICE_dump_mnc	write snap-shot output using MNC	8
SEAICE_dumpFreq	SEAICE dump frequency. (s)	7
SEAICE_eccen	sea-ice eccentricity of the elliptical yield curve	11
SEAICE_elasticParm	parameter that sets relaxation timescale	7
SEAICE_emissivity	longwave ocean-surface emissivity (-)	12
SEAICE_EPS	small number	21
SEAICE_EPS_SQ	small number square	16
SEAICE_evpAlpha	dimensionless parameter 2*evpTauRelax/deltaTevp	21
SEAICE_evpBeta	dimensionless parameter deltaTdyn/deltaTevp	16
SEAICE_evpDampC	evp damping constant (Hunke,JCP,2001) (kg/m^2)	8
SEAICE_evpTauRelax	relaxation timescale tau (s)	9
SEAICE_frazilFrac	Fraction of surface level negative heat content	18
SEAICE_freeze	FREEZING TEMP. OF SEA WATER	11
SEAICE_gamma_t		8
SEAICE_gamma_t_frz		6
SEAICE_growMeltByConv	grow/melt according to convergence of turbulence	7
SEAICE_hice_reg	usually set to 5 cm. Specifies a minimun	11
SEAICE_ice_emiss	longwave ice-surface emissivity (-)	8
SEAICE_iceConduct	sea-ice conductivity	6
SEAICE_initialHEFF	initial sea-ice thickness (m)	6
SEAICE_JFNK_lsIter	number of Newton iterations after which the	8
SEAICE_JFNK_tolIter	number of Newton iterations after which the	6
SEAICE_JFNKalpha	(1,2] parameter for inexact Newton Method (def = 1)	6
SEAICE_JFNKepsilon	step size for the FD-gradient in s/r seaice_jacvec	6
SEAICE_JFNKphi	[0,1] parameter for inexact Newton Method (def = 1)	6
SEAICE_latentIce		4
SEAICE_latentWater		4
SEAICE_lhEvap	latent heat of evaporation for water (J/kg)	12
SEAICE_lhFusion	latent heat of fusion for ice and snow (J/kg)	13
SEAICE_LSRrelaxU	relaxation parameter for LSR-solver: U/V-component	7
SEAICE_LSRrelaxV		7
SEAICE_maskRHS	mask the RHS of the solver where there is no ice	7
SEAICE_mcPheePiston	ocean-ice turbulent flux piston velocity (m/s)	15
SEAICE_mcPheeStepFunc	use step function (not linear tapering) in	7
SEAICE_mcPheeTaper	tapering down of turbulent flux term with ice	12
SEAICE_mon_mnc	write monitor to netcdf file	10
SEAICE_monFreq	SEAICE monitor frequency. (s)	18
SEAICE_multDim	number of ice categories	55
SEAICE_no_slip	apply no slip boundary conditions to seaice velocity	9
SEAICE_OLx	overlaps for LSR-preconditioner in JFNK solver;	19
SEAICE_OLy		19
SEAICE_PARM01		2
SEAICE_PARM02		2
SEAICE_PARM03		2
SEAICE_PDF	prescribed sea-ice distribution within grid box	14
SEAICE_rhoAir	density of air (kg/m^3)	16
SEAICE_rhoIce	density of sea ice (kg/m^3)	41
SEAICE_rhoSnow	density of snow (kg/m^3)	19
SEAICE_salinity		4
SEAICE_salinityTracer	use SItracer to exchange and trace ocean	8
SEAICE_salt0	prescribed salinity of seaice (in g/kg).	7
SEAICE_saltFrac	salinity of newly formed seaice defined as a	10
SEAICE_sensHeat		4
SEAICE_shortwave	ice penetration shortwave radiation factor	6
SEAICE_snow_emiss	longwave snow-surface emissivity (-)	8
SEAICE_snowConduct	snow conductivity	6
SEAICE_snowThick	cutoff snow thickness (for snow-albedo)	6
SEAICE_strength	sea-ice strength Pstar	9
SEAICE_tauAreaObsRelax	Timescale of relaxation to observed	8
SEAICE_tave_mnc	write TimeAverage output using MNC	8
SEAICE_taveFreq	SEAICE time-averaging frequency. (s)	9
SEAICE_tempFrz0	sea water freezing point is	9
SEAICE_tensilDepth	crtical depth for sea-ice tensile strength (def 0.)	7
SEAICE_tensilFac	sea-ice tensile strength factor, values in [0,1]	7
SEAICE_useMultDimSnow	use same fixed pdf for snow as for	5
SEAICE_waterAlbedo	water albedo	8
SEAICE_waterDrag	water-ice drag coefficient * water density	13
SEAICE_waterDrag_south	Southern Ocean SEAICE_waterDrag	14
SEAICE_waterTurnAngle	and ice-water interfacial stress (in degrees)	21
SEAICE_wetAlbTemp	Temp (deg.C) above which wet-albedo values are used	6
SEAICE_wetIceAlb	summer albedo	7
SEAICE_wetIceAlb_south	Southern Ocean SEAICE_wetIceAlb	8
SEAICE_wetSnowAlb	wet snow albedo	7
SEAICE_wetSnowAlb_south	Southern Ocean SEAICE_wetSnowAlb	8
SEAICE_zetaMaxFac	factor determining the maximum viscosity (s)	10
SEAICE_zetaMin	lower bound for viscosity (default = 0) (N s/m^2)	11
SEAICEaddSnowMass	in computing seaiceMass, add snow contribution	6
SEAICEadvAge		4
SEAICEadvArea	turn on advection of fraction area	17
SEAICEadvHeff	turn on advection of effective thickness	16
SEAICEadvSalt	turn on advection of salt (does not work with	16
SEAICEadvSchAge		4
SEAICEadvSchArea	sets the advection scheme for area	24
SEAICEadvScheme	sets the advection scheme for thickness and area	16
SEAICEadvSchHeff	sets the advection scheme for effective thickness	21
SEAICEadvSchSalt	sets the advection scheme for sea ice salinity	18
SEAICEadvSchSnow	sets the advection scheme for snow on sea-ice	18
SEAICEadvSnow	turn on advection of snow (does not work with	13
SEAICEaEVPalphaMin	lower limit of alpha and beta, regularisation	8
SEAICEaEVPcoeff	main coefficent for adaptive EVP (largest	7
SEAICEaEVPcStar	multiple of stabilty factor: alpha*beta=cstar*gamma	8
SEAICEapproxLevInAd	level of approximation in seaice adjoint	12
SEAICEaStar	ice concentration parameter similar to gStar for	6
SEAICEbasalDragK1		7
SEAICEbasalDragK2	if > 0, turns on basal drag	13
SEAICEbasalDragU0		7
SEAICEdiffKhAge		4
SEAICEdiffKhArea	sets the diffusivity for area (m^2/s)	20
SEAICEdiffKhHeff	sets the diffusivity for effective thickness (m^2/s)	17
SEAICEdiffKhSalt	sets the diffusivity for sea ice salinity (m^2/s)	13
SEAICEdiffKhSnow	sets the diffusivity for snow on sea-ice (m^2/s)	13
SEAICEetaZmethod	determines how shear-viscosity eta is computed at	12
SEAICEgStar	maximum ice concentration that participates in ridging	11
SEAICEheatConsFix	If true then fix ocn<->seaice advective heat flux.	7
SEAICEhighOrderVorticity	momentum advection parameters analogous to	8
SEAICEhStar	empirical thickness (ridging parameter)	6
SEAICEkrylovIterMax		4
SEAICElinearIterMax	number of allowed linear solver iterations for	17
SEAICEmaxRaft	regularization parameter (default=1)	7
SEAICEmomAdvection	turn on advection of momentum (default = .false.)	10
SEAICEmuRidging	tuning parameter similar to hStar for Lipcomb et al	6
SEAICEnEVPstarSteps	number of evp*-steps	11
SEAICEnewtonIterMax		5
SEAICEnonLinIterMax	number of allowed non-linear solver iterations	18
SEAICEnonLinTol	non-linear tolerance parameter for implicit solvers	6
SEAICEpartFunc	=0 use Thorndyke et al (1975) participation function =1 use Lipscomb et al (2007) participation function	7
SEAICEpreconLinIter	number linear iterations in preconditioner	9
SEAICEpreconNL_Iter	number non-linear iterations in preconditioner	7
SEAICEpresH0	HEFF threshold for ice strength (m)	12
SEAICEpresPow0	HEFF exponent for ice strength below SEAICEpresH0	8
SEAICEpresPow1	HEFF exponent for ice strength above SEAICEpresH0	8
SEAICEpressReplFac	interpolator between PRESS0 and regularized PRESS	12
SEAICEredistFunc	=0 assume ridged ice is uniformly distributed	11
SEAICErestoreUnderIce	restore surface T/S also underneath ice	6
SEAICEridgingIterMax	maximum number of ridging iterations	7
SEAICEscaleSurfStress	if TRUE, scale ice-ocean and ice-atmosphere	16
SEAICEselectKEscheme	momentum advection parameters analogous	7
SEAICEselectVortScheme	to selectKEscheme and selectVortScheme	8
SEAICEshearParm	<=1 reduces amount of energy lost to ridge building	6
SEAICEsimpleRidging	use Hibler(1979) ridging (default=.true.)	6
SEAICEsnowFracRidge	fraction of snow that remains on ridged	8
seaiceSpongeThickness	number grid points that make up the sponge layer (def=0)	56
SEAICEstressFactor	factor by which ice affects wind stress (default=1)	11
SEAICEturbFluxFormula		4
SEAICEupwindVorticity	highOrderVorticity, upwindVorticity,	8
SEAICEuseAB2		4
SEAICEuseAbsVorticity	useAbsVorticity, useJamartMomAdv for vector	5
SEAICEuseBDF2	use 2nd-order backward difference approach	13
SEAICEuseDYNAMICS	If false, do not use dynamics;	19
SEAICEuseDYNAMICSswitchInAd	switch on/off seaice Dyn in adjoint mode (def=F)	11
SEAICEuseEVPpickup	Set to false in order to start EVP solver with	6
SEAICEuseEVPrev	If true use revisited elastic viscous plastic	9
SEAICEuseEVPstar	If true use modified elastic viscous plastic	11
SEAICEuseFlooding	turn on scheme to convert submerged snow into ice	6
SEAICEuseFluxForm	use flux form for advection and diffusion	7
SEAICEuseFREEDRIFT	If True use free drift velocity instead of EVP	18
SEAICEuseFREEDRIFTswitchInAd	switch on/off Free-Drift in adjoint mode (def=F)	11
SEAICEuseIMEX	use IMplicit/EXplicit scheme with JFNK	7
SEAICEuseJamartMomAdv	invariant momentum in the ocean	7
SEAICEuseJFNK	If true, use Jacobi-free Newton-Krylov solver	20
SEAICEuseKrylov	If true, use matrix-free Krylov solver with Picard	15
SEAICEuseLinRemapITD	use linear remapping (Lipscomb et al. 2001)	6
SEAICEuseMetricTerms	use metric terms for dynamics solver	9
SEAICEuseMultiTileSolver	in LSR, use full domain tri-diagonal solver	7
SEAICEusePicardAsPrecon	If true, allow SEAICEuseLSR = .TRUE. as a	13
SEAICEuseStrImpCpl	If true use strongly implicit coupling formulation	8
SEAICEuseTEM	to use truncated ellipse method (see Geiger et al.	8
SEAICEuseTilt	If true then include surface tilt term in dynamics	5
SEAICEwriteState	If true, write sea ice state to file;	6
seaLev_Z	the reference height of sea-level (usually zero)	12
SEGRAD		6
select_rStar	option related to r* vertical coordinate	74
select_ZenAlbedo	switch to different methods to compute albedo (direct part) 0 just use exf_albedo 1 use daily mean albedo from exf_zenithangle_table.F 2 use daily mean albedo computed as in pkg/aim_v23 3 use daily variable albedo	18
selectAddFluid	option to add mass source/sink of fluid in the interior	37
selectBotDragQuadr	quadratic bottom drag discretisation option:	32
selectCoriMap	select setting of Coriolis parameter map:	20
selectFindRoSurf	select the way surf. ref. pressure (=Ro_surf) is	13
selectImplicitDrag	select Implicit treatment of bottom/top drag	24
selectKEscheme	Kinetic Energy scheme selector (Vector Inv.)	12
selectNHfreeSurf	option for Non-Hydrostatic (free-)Surface formulation:	24
selectP_inEOS_Zc	select which pressure to use in EOS (for z-coords)	28
selectSigmaCoord	option related to sigma vertical coordinate	50
selectVortScheme	Scheme selector for Vorticity term (Vector Inv.)	48
set_regMask	region-mask set-index that define the region n	5
sflux_errfile		8
sflux_exfremo_intercept		6
sflux_exfremo_slope		6
sflux_interpMethod		8
sflux_lat0		7
sflux_lat_inc		7
sflux_lon0		7
sflux_lon_inc		8
sflux_nlat		8
sflux_nlon		8
sfluxconst		5
sfluxfile		13
SFluxFile		11
sfluxmeanbarfile		11
sfluxperiod		8
sfluxRepCycle		6
sfluxstartdate1		5
sfluxstartdate2		5
sfluxStartTime		7
SGRunOff_inscal		4
SGRunOff_remov_intercept		4
SGRunOff_remov_slope		4
SGRunOffconst		4
SGRunOffFile		5
SGRunOffperiod		5
SGRunOffstartdate1		5
SGRunOffstartdate2		5
SGRunOffStartTime		5
Shap_alwaysExchTr	always call exch(Tracer) nShapTr times	9
Shap_alwaysExchUV	always call exch(U,V) nShapUV times	10
Shap_diagFreq	Frequency^-1 for diagnostic output (s)	8
shap_filt_TrStagg	if using a Stagger time-step, filter T,S before	5
shap_filt_uvStar	filter applied to u*,v* (before SOLVE_FOR_P)	8
Shap_funct	define which Shapiro Filter function is used	44
Shap_noSlip	No-slip parameter (=0 free sleep ; =1 No-slip)	8
SHAP_PARM01		2
Shap_TrLength	Length scale for tracer filter	9
Shap_Trtau	Time scale for tracer filter	11
Shap_uvLength	Length scale for momentum filter	11
Shap_uvtau	Time scale for momentum filter	22
shelf_edge_pos		8
shelf_flat_width		5
shelf_max_draft		5
shelf_min_draft		7
shelf_slope_scale		6
SHELFICE_dump_mnc	use netcdf for snapshot output	8
SHELFICE_dumpFreq	analoguous to dumpFreq (= default)	6
SHELFICE_oldCalcUStar	use old uStar averaging expression	7
SHELFICE_PARM01		2
SHELFICE_tave_mnc	use netcdf for time-averaged output	8
SHELFICE_taveFreq	analoguous to taveFreq (= default)	8
SHELFICEadvDiffHeatFlux	use advective-diffusive heat flux into the	6
SHELFICEboundaryLayer	turn on vertical merging of cells to for a	9
SHELFICEconserve	use conservative form of H&O-thermodynamics	8
SHELFICEDragLinear	linear drag at bottom shelfice (1/s)	10
SHELFICEDragQuadratic	quadratic drag at bottom shelfice (default	14
SHELFICEDynMassOnly	step ice mass ONLY with Shelficemassdyntendency	5
shelfIceFile	File containing the topography of the shelfice draught	4
SHELFICEHeatCapacity_Cp	heat capacity of ice shelf (def: 2000 J/K/kg)	4
SHELFICEheatTransCoeff	constant heat transfer coefficient that	9
SHELFICEkappa		7
SHELFICElatentHeat	latent heat of fusion (def: 334000 J/kg)	12
SHELFICEloadAnomalyFile	name of shelfice load anomaly file	8
SHELFICEMassDynTendFile	file name for other mass tendency	7
SHELFICEmassFile	name of shelfice Mass file	8
SHELFICEMassStepping	flag to step forward ice shelf mass/thickness	8
SHELFICEsaltTransCoeff	constant salinity transfer coefficient that	10
SHELFICEselectDragQuadr		16
SHELFICEthetaSurface		10
SHELFICEtopoFile	File containing the topography of the	7
SHELFICETransCoeffTFile		6
SHELFICEuseGammaFrict	use velocity dependent exchange coefficients,	12
SHELFICEwriteState	enable output	6
shiCdrag	quadratic drag coefficient to compute uStar	7
shiKinVisc	constant kinetic viscosity used to compute	6
shiPrandtl	constant Prandtl (13.8) and Schmidt (2432.0)	6
shiRc	??? (not used, def: 0.2)	5
shiSchmidt	constant Prandtl (13.8) and Schmidt (2432.0)	6
shiZetaN	??? (def: 0.052)	7
sideDragFactor	side-drag scaling factor (used only if no_slip_sides)	14
sigma_dvm		5
siobEperiod		8
siobErepCycle		7
siobEstartdate1		7
siobEstartdate2		7
siobEstartTime		6
siobNperiod		8
siobNrepCycle		7
siobNstartdate1		7
siobNstartdate2		7
siobNstartTime		6
siobSperiod		8
siobSrepCycle		7
siobSstartdate1		7
siobSstartdate2		7
siobSstartTime		6
siobWperiod		8
siobWrepCycle		7
siobWstartdate1		7
siobWstartdate2		7
siobWstartTime		6
SIsal0		4
SIsalFRAC		3
SItrExpand0		11
SItrFile		6
SItrFromFlood0		10
SItrFromFloodFrac		13
SItrFromOcean0		10
SItrFromOceanFrac		14
SItrMate		22
SItrName		25
SItrNameLong		7
SItrNumInUse		20
SItrUnit		9
SLrelaxobcsbound		8
SLrelaxobcsinner		8
smag3D_coeff	Isotropic 3-D Smagorinsky coefficient (-)	7
SMF		6
smooth2D_Lx0		6
smooth2D_Ly0		6
smooth2Dfilter		7
smooth2Dnbt		9
smooth2Dsize		5
smooth2Dtype		8
smooth3D_Lx0		6
smooth3D_Ly0		6
smooth3D_Lz0		6
smooth3Dfilter		7
smooth3Dnbt		9
smooth3DsizeH		5
smooth3DsizeZ		6
smooth3DtypeH		7
smooth3DtypeZ		7
smooth_nml		2
smoothAbsFuncRange	1/2 of interval around zero, for which FORTRAN ABS	14
smrarea_errfile		6
smrareabarfile		12
smrareadatfile		9
smrareaperiod		3
smrareastartdate1		5
smrareastartdate2		5
smrsssbarfile		9
smrsstbarfile		9
sMxL_default	default value for salinity in MixLayer [psu]	9
snapshot_mnc		22
snow_emissivity		16
snowAgTime	snow aging time scale [s]	6
snowprecip_errfile		8
snowprecip_exfremo_intercept		5
snowprecip_exfremo_slope		5
snowprecip_interpMethod		8
snowprecip_lat0		7
snowprecip_lat_inc		7
snowprecip_lon0		7
snowprecip_lon_inc		8
snowprecip_nlat		8
snowprecip_nlon		8
snowprecipconst		5
snowprecipfile		12
snowprecipperiod		8
snowprecipRepCycle		6
snowprecipstartdate1		5
snowprecipstartdate2		5
snowprecipStartTime		7
SNrelaxobcsbound		8
SNrelaxobcsinner		8
SolarFile		16
SOLC		17
SOLV_MAX_ITERS		4
SOLV_NCHECK	iteration interval for LSR-solver convergence test	11
spongeThickness	number grid points that make up the sponge layer (def=0) specify Orlanski boundary conditions for northern/ use open boundary computations following Stevens (1990) use phase velocity contribution for open boundary use advective contribution for open boundary	88
SPovershoot		6
SPsalFRAC		24
sRef	reference vertical profile for salinity/specific humidity	47
sRefFile	File containing reference salinity/spec.humid. sRef (1.D)	9
SrelaxStevens	relaxation time scale (in seconds) for T/S-points	6
ssh_errfile		8
sshv4cost_errfactor		7
sshv4cost_errfile		8
sshv4cost_scalefile		6
sssdatfile		9
ssserrfile		9
sssstartdate1		7
sssstartdate2		7
sstbarfile		11
sstdatfile		12
ssterrfile		13
sstExtrapol	extrapolation coeff from 1rst 2 levels up to surface	9
sststartdate1		7
sststartdate2		7
STABILITY_THRESHOLD		8
staggerTimeStep	enable a Stagger time stepping U,V (& W) then T,S	36
startDate		4
startDate_1		1
startDate_2		1
startFromPickupAB2	with AB-3 code, start from an AB-2 pickup	8
startIceModel	=1 : start ice model at nIter0 ; =0 : use pickup files -1 : start from a small pickup (without Mix.Layer)	7
startTime	Starting time for this integration ( s ).	145
startYear		7
stat_fields	List of statistics output Fields	4
stat_fname		9
stat_freq	Frequency (in s) of statistics output	7
stat_phase	phase (in s) to write statistics output	5
stat_region	List of statistics output Regions	4
stefan	Stefan-Boltzmann constant [W/m^2/K^4]	33
stepFwd_oceMxL	step forward mixed-layer T & S (slab-ocean)	18
streamice_addl_backstress		12
streamice_adjDump		5
streamice_adot_uniform		5
STREAMICE_ADV_SCHEME		12
STREAMICE_alt_driving_stress		5
STREAMICE_apply_firn_correction		17
streamice_bg_surf_slope_x		11
streamice_bg_surf_slope_y		11
STREAMICE_calve_to_mask		9
streamice_CFL_factor		4
streamice_cg_tol		7
STREAMICE_chkfixedptconvergence		6
STREAMICE_chkresidconvergence		8
streamice_density		103
streamice_density_firn		47
streamice_density_ocean_avg		40
STREAMICE_diagnostic_only		5
STREAMICE_dump_mdsio		7
STREAMICE_dump_mnc		6
streamice_err_norm		14
STREAMICE_EW_periodic		9
streamice_firn_correction		29
streamice_forcing_period		8
STREAMICE_h_ctrl_const_surf		4
streamice_kx_b_init		6
streamice_ky_b_init		5
STREAMICE_lower_cg_tol		5
streamice_max_cg_iter		11
streamice_max_nl_iter		9
streamice_maxcgiter_cpl		5
streamice_maxnliter_cpl		10
STREAMICE_move_front		5
streamice_nonlin_tol		7
streamice_nonlin_tol_adjoint		4
streamice_nonlin_tol_fp		7
STREAMICE_NS_periodic		9
STREAMICE_PARM01		2
STREAMICE_PARM02		2
STREAMICE_PARM03		2
STREAMICE_PARMOAD		2
STREAMICE_PARMPETSC		2
STREAMICE_PARMTRACER		2
STREAMICE_ppm_driving_stress		6
streamice_smooth_gl_width		11
STREAMICE_tave_mdsio		5
STREAMICE_tave_mnc		6
streamice_use_petsc		7
streamice_vel_update		7
streamice_wgt_avthick		4
streamice_wgt_drift		5
streamice_wgt_surf		5
streamice_wgt_tikh		4
streamice_wgt_vel		4
STREAMICEbasalTracConfig		8
STREAMICEbasalTracFile		6
STREAMICEBdotConfig		5
STREAMICEBdotFile		6
STREAMICEBdotTimeDepFile		8
STREAMICEcalveMaskFile		7
STREAMICEcostMaskFile		6
STREAMICEGlenConstConfig		6
STREAMICEGlenConstFile		7
STREAMICEHBCxFile		6
STREAMICEHBCyFile		6
STREAMICEhmaskFile		4
STREAMICEsigcoordFile		4
STREAMICEsigcoordInit		6
STREAMICEthickFile		9
STREAMICEthickInit		8
STREAMICEtopogFile		6
STREAMICETrac2DBCxFile		4
STREAMICETrac2DBCyFile		4
STREAMICETrac2DINITFile		1
STREAMICEuDirichValsFile		6
STREAMICEuFaceBdryFile		6
STREAMICEuFluxTimeDepFile		8
STREAMICEuMassFluxFile		4
STREAMICEuNormalStressFile		6
STREAMICEuNormalTimeDepFile		8
STREAMICEuShearStressFile		6
STREAMICEuShearTimeDepFile		8
STREAMICEvDirichValsFile		6
STREAMICEvelOptimFile		4
STREAMICEvFaceBdryFile		6
STREAMICEvFluxTimeDepFile		6
STREAMICEvMassFluxFile		4
STREAMICEvNormalStressFile		6
STREAMICEvNormalTimeDepFile		8
STREAMICEvShearStressFile		6
STREAMICEvShearTimeDepFile		8
stressReduction	reduction factor for wind-stress under sea-ice [0-1]	18
subMeso_Ceff	efficiency coefficient of Mixed-Layer Eddies [-]	7
subMeso_invTau	inverse of mixing time-scale in sub-meso parameteriz. [s^-1]	7
subMeso_LfMin	minimum value for length-scale Lf [m]	6
subMeso_Lmax	maximum horizontal grid-scale length [m]	7
surfQfile	File containing surface heat flux, excluding SW	4
surfQnetFile	File containing surface net heat flux	14
surfQswFile	File containing surface shortwave radiation	14
SWCAP		9
swdown_errfile		8
swdown_exfremo_intercept		5
swdown_exfremo_slope		5
swdown_interpMethod		8
swdown_lat0		7
swdown_lat_inc		7
swdown_lon0		7
swdown_lon_inc		8
swdown_nlat		8
swdown_nlon		8
swdownconst		5
swdownfile		17
swdownperiod		10
swdownRepCycle		6
swdownstartdate1		5
swdownstartdate2		5
swdownStartTime		7
swflux_errfile		8
swflux_exfremo_intercept		5
swflux_exfremo_slope		5
swflux_interpMethod		8
swflux_lat0		7
swflux_lat_inc		7
swflux_lon0		7
swflux_lon_inc		8
swflux_nlat		8
swflux_nlon		8
swfluxconst		5
swfluxfile		17
swfluxperiod		8
swfluxRepCycle		6
swfluxstartdate1		5
swfluxstartdate2		5
swfluxStartTime		7
SWWIL		9
T A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
tAlpha	Linear EOS thermal expansion coefficient ( 1/degree ).	15
tauCD	CD scheme coupling timescale ( s )	9
tauRelax_MxL	Relaxation time scale for MixLayer T [s]	10
tauRelax_MxL_salt	Relaxation time scale for MixLayer S [s]	9
tauRelaxPTR		7
tauRelaxS		7
tauRelaxT		7
tauRelaxU		7
tauRelaxV		7
tauSaltClimRelax	Relaxation to climatology time scale ( s ).	12
tauSaltClimRelax3Dim	replaced by pkg/rbcs (3.D Relaxation B.Cs)	4
tauSaltRelax		5
tauThetaClimRelax	Relaxation to climatology time scale ( s ).	14
tauThetaClimRelax3Dim	replaced by pkg/rbcs (3.D Relaxation B.Cs)	4
tauThetaRelax		5
tauThetaZonRelax	time-scale [s] for relaxation towards Zon.Aver. SST	7
tauTr1ClimRelax	old parameter (will be removed 1 day)	5
tauu_errfile		8
tauuFile		7
tauv_errfile		8
tauvFile		7
tauxbarfile		12
tauybarfile		12
tave_lastIter	(for state variable only) fraction of the last time	6
taveDump		8
taveFreq	Frequency with which time-averaged model state	39
tbarfile		22
tCylIn	Temperature of the cylinder inner boundary	5
tCylOut	Temperature of the cylinder outer boundary	5
tdatfile		10
temp0errfile		8
temp_addMass	temperature of addMass array	16
temp_EvPrRn	temperature of Rain & Evap.	60
temp_useDWNSLP	true if Down-Sloping flow applies to temperature	6
tempAdvection	Flag which turns advection of temperature on and off.	14
tempAdvScheme	Temp. Horiz.Advection scheme selector	24
tempDiffusion	diffusion of temperature on/off (flag not used)	4
temperrfile		12
tempForcing	Flag which turns external forcing of temperature on/off	12
tempImplVertAdv	Turns on implicit vertical advection for Temperature	14
tempSnowAlb	temperature transition from ColdSnow to WarmSnow Alb. [oC]	7
tempSnowAlbL	temperature transition from ColdSnow to WarmSnow Alb. (oC)	7
tempStepping	Turns temperature equation time-stepping on/off	24
tempVertAdvScheme	Temp. Vert. Advection scheme selector	14
Terrmax	Temperature convergence criteria [oC]	7
Tf0kel	Freezing temp of fresh water in Kelvin = 273.15	16
the_run_name	string identifying the name of the model run	23
TheCalendar		2
theta_Fe_max_hi	Maximum Chl:c ratio, abundant iron	5
theta_Fe_max_lo	Maximum Chl:c ratio, extreme iron limitation	6
thetaClimFile	File containing surface theta climataology used	15
thetaConst	Constant reference for potential temperature	14
thetaEuler	Euler angle, rotation about new x-axis	7
thetaMin	unfortunate variable name ; replaced by xgOrigin	4
thetaRelaxFile		9
ThetFile		4
thSIce_calc_albNIR	calculate Near Infra-Red Albedo	6
THSICE_CONST		2
THSICE_COST		2
thsice_cost_ice_flag		6
thSIce_deltaT	ice model time-step, seaice thicken/extend [s]	43
thSIce_diagFreq	Frequency^-1 for diagnostic output [s]	7
thSIce_diffK	thickness (horizontal) diffusivity [m^2/s]	10
thSIce_dtTemp	ice model time-step, solve4temp [s]	7
thSIce_mon_mnc	write monitor to netcdf file	7
thSIce_monFreq	Frequency^-1 for monitor output [s]	8
THSICE_PARM01		2
thSIce_pickup_read_mnc	pickup read w/ MNC	5
thSIce_pickup_write_mnc	pickup write w/ MNC	9
thSIce_skipThermo	by-pass seaice thermodynamics	11
thSIce_snapshot_mnc	write snap-shot output using MNC	7
thSIce_tave_mnc	write TimeAverage output using MNC	7
thSIce_taveFreq	Frequency^-1 for time-Aver. output [s]	9
thSIceAdvScheme	thSIce Advection scheme selector	26
thSIceBalanceAtmFW	select balancing Fresh-Water flux from Atm+Land =0 : none ; =1 : uniform ; =2 : scaled by Precip	15
thSIceEnthp_InitFile	File name for initial ice enthalpy	8
thSIceFract_InitFile	File name for initial ice fraction	6
thSIceSnowA_InitFile	File name for initial snow Age	6
thSIceSnowH_InitFile	File name for initial snow thickness	6
thSIceThick_InitFile	File name for initial ice thickness	6
thSIceTsurf_InitFile	File name for initial surf. temp	6
tidePot_exfremo_intercept		5
tidePot_exfremo_slope		5
tidePot_interpMethod		8
tidePot_lat0		7
tidePot_lat_inc		7
tidePot_lon0		7
tidePot_lon_inc		8
tidePot_nlat		8
tidePot_nlon		8
tidePotConst		4
tidePotFile		11
tidePotPeriod		8
tidePotRepCycle		6
tidePotStartdate1		5
tidePotStartdate2		5
tidePotStartTime		7
timeave_mnc		16
timePhase	phase (in s) within the frequency period to write output	5
timeSnowAge	snow aging time scale (s)	6
tIter0	retired parameter	4
tmidatfile		10
tmistartdate1		7
tmistartdate2		7
top_Pres	pressure (P-Coords) or reference pressure (Z-Coords) at the top	13
topexfile		10
topexintercept		7
topexperiod		8
topexslope		7
topexstartdate1		7
topexstartdate2		7
topoFile	File containing the topography of the surface (unit=m)	12
tp_errfile		10
tpTimeMaskFile		10
trac_EvPrRn	tracer conc. in Rain & Evap (old passive tracer code)	4
tracerAdvScheme	tracer advection scheme (old passive tracer code)	4
TracerFile		8
TracerRfile		1
tracForcingOutAB	=1: take tracer (Temp,Salt,pTracers) forcing contribution	18
TRCNV		6
tRef	reference vertical profile for potential temperature	66
tRefFile	File containing reference Potential Temperat. tRef (1.D)	9
TrelaxStevens		6
TrFile		7
TRLSC		6
TRSHC		6
TRVDI		7
TRVDS		6
turb		6
two_stream		7
twoDigitYear	when set, use 2-digit year extension YR	22
U A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
ubarfile		13
udrifterrfile		6
udriftfile		6
uIceFile	File containing initial sea-ice U comp. velocity	8
umax		6
umin	minimum wind speed used in bulk-formulae [m/s]	23
uniformLin_PhiSurf	Set to true to use a uniform Bo_surf in the	7
upwindShear	use 1rst order upwind interp. (V.I., vertical advection)	9
upwindVorticity	bias interpolation of vorticity in the Coriolis term	23
Urelaxobcsbound		12
Urelaxobcsinner		12
use3dCoriolis	Turns the 3-D coriolis terms (in Omega.cos Phi) on - off	13
useAbsVorticity	work with f+zeta in Coriolis terms	12
useAIM		36
useAltDeriv		5
useAnisotropicViscAgridMax	Changed to be default behavior. Can	4
useAreaViscLength	Set to true to use old scaling for viscous lengths,	7
useATM2D		5
useAtm_Phys		29
useAtmWind	use wind vector (uwind/vwind) to compute	63
useAUTODIFF		12
useBBL		22
useBetaPlaneF	Coriolis coeff = f0 + beta.y (replaced by selectCoriMap=1)	4
useBLING	flag to turn on/off BLING pkg	14
useBOLUS		4
useBulkForce	use surf. fluxes from bulk-forcing external S/R	20
useCAL		41
useCDscheme	use CD-scheme to calculate Coriolis terms.	27
useCentralDiff		6
useCFC	flag to turn on/off CFC pkg	11
useCheapAML		18
useCheapTracer	use passive tracer option (off by default)	21
useClouds	use clouds option (off by default)	13
useConstantF	Coriolis coeff set to f0 (replaced by selectCoriMap=0)	4
useCoriolis	Flag which turns the coriolis terms on and off.	12
useCoupler	use Coupler for a multi-components set-up.	40
useCTRL		30
useCubedSphereExchange	use Cubed-Sphere topology domain.	90
useDARWIN	flag to turn on/off darwin pkg	18
useDiagnostics		226
useDIC	flag to turn on/off DIC pkg	21
useDLongWave	use imported downward longwave (off by default)	14
useDOWN_SLOPE		20
useEBM		9
useECCO		17
useEMBED_FILES		7
useEnergyConservingCoriolis		7
useEXF	use surf. fluxes from exf external S/R	44
useExfCheckRange	check range of input/output field values	6
useExfYearlyFields	when set, automatically add extension	67
useExfZenIncoming	compute incoming solar radiation along with zenith angle	10
useFixedCEast		9
useFixedCWest		9
useFizhi		9
useFLT		12
useFluxFormula_AIM	set to T when using AIM flux formula rather	10
useFluxLimit	use flux limiting advection (off by default)	13
useFRAZIL		12
useFreshWaterFlux	option to include evap+precip (on by default)	19
useFullLeith	Set to true to use full Leith viscosity(may be unstable	8
useGCHEM		19
useGCMwVel		5
useGGL90		27
useGGL90inAdMode		8
useGMRedi		51
useGMRediInAdMode		8
useGrdchk		8
useGridAlt		6
useHB87stressCoupling	use an intergral over ice and ocean surface	5
useHibler79IceStrength	if true original ice strength parameterization	8
useICEFRONT		17
useIDEMIX		18
useImportCO2	True => use the Imported atmos. CO2 from coupler	7
useImportFice	True => use the Imported Seaice fraction (DIC-only)	8
useImportFlxCO2	True => use the Imported air-sea CO2 flux from coupler	7
useImportFW	True => use the Imported Fresh Water flux fr cpl	10
useImportHFlx	True => use the Imported HeatFlux from couler	8
useImportMxlD	True => use Imported Mix.Layer Detph from coupler	6
useImportRunOff	True => use the Imported RunOff flux from coupler	6
useImportSIce	True => use the Imported Sea-Ice mass as ice-loading	13
useImportSLP	True => use the Imported Sea-level Pressure	13
useImportSltPlm	True => use the Imported Salt-Plume flux from coupler	7
useImportSSS	True => use the Imported SSS from coupler	6
useImportSST	True => use the Imported SST from coupler	8
useImportTau	True => use the Imported Wind-Stress from couler	7
useImportThSIce	True => use the Imported thSIce state var from coupler	17
useImportVsq	True => use the Imported Surf. velocity^2	6
useImportWSpd	True => use the Imported surf. Wind speed from coupler	7
useISOMIPTD	use simple ISOMIP thermodynamics, def: F	9
useJamartMomAdv	Use wet-point method for V.I. non-linear term	17
useJamartWetPoints	Use wet-point method for Coriolis (Jamart & Ozer 1986)	9
useKL10		17
useKPP		51
useKPPinAdMode		8
useLand		18
useLayers		33
useMATRIX		14
useMaykutSatVapPoly	use Maykut Polynomial for saturation vapor pressure	8
useMin4hFacEdges	set hFacW,hFacS as minimum of adjacent hFacC factor	7
useMissingValue	put MissingValue where mask = 0 (NetCDF output only)	8
useMNC		146
useMY82		20
useMYPACKAGE		25
useNEST_CHILD	use Child Nesting interface (pkg/nest_child)	16
useNEST_PARENT	use Parent Nesting interface (pkg/nest_parent)	11
useNHMTerms	If TRUE use non-hydrostatic metric terms.	12
useOASIS	use OASIS-coupler for a multi-components set-up.	12
useOBCS		68
useOBCSYearlyFields	when reading Open-Boundary values, assume yearly	21
useObsEmP		5
useObsRunoff		5
useOffLine		23
useOldFreezing	use the old version (before checkpoint52a_pre, 2003-11-12)	4
useOPPS		11
useOrlanskiEast		15
useOrlanskiNorth		15
useOrlanskiSouth		15
useOrlanskiWest		15
usePickupBeforeC35	to restart from old-pickup files (generated with code	4
usePickupBeforeC54	start from old-pickup files, generated with code from	10
usePP81		21
usePrecip	use imported precipitation (off by default)	10
usePROFILES		18
usePTRACERS		55
usePW79thermodynamics	use 0-layer thermodynamics as described in	10
useRBCptracers		3
useRBCpTrNum		7
useRBCS		24
useRBCsalt		8
useRBCtemp		8
useRBCuVel		15
useRBCvVel		15
usercost_datafile		6
usercost_errfile		6
useRealFreshWaterFlux	if True (=Natural BCS), treats P+R-E flux	61
useREGRID		10
useRelativeWind	use relative wind (off by default)	15
useRunClock		10
useSALT_PLUME		38
useSALT_PLUMEinAdMode		8
useSBO		10
useSEAICE		70
useSEAICEinAdMode		10
useSETRLSTK		6
useSHAP_FILT		11
useShelfIce		36
useSIGREG		8
useSingleCpuInput	When useSingleCpuInput is set, EXF_INTERP_READ	7
useSingleCpuIO	When useSingleCpuIO is set, MDS_WRITE_FIELD outputs from	28
useSmag3D	Use isotropic 3-D Smagorinsky	14
useSMOOTH		29
useSmoothCorrel2DinAdMode		9
useSphereF	Coriolis = 2.omega.sin(phi) (replaced by selectCoriMap=2)	4
useSPOIL	flag to turn on/off SPOIL pkg	6
useSRCGSolver	Set to true to use conjugate gradient	7
useStabilityFct_overIce	over sea-ice, compute turbulent transfert	6
useStevensAdvection		5
useStevensEast		16
useStevensNorth		16
useStevensPhaseVel		5
useStevensSouth		16
useStevensWest		16
useStrainTensionVisc	Set to true to use Strain-Tension viscous terms	8
useStreamIce		16
useStressOption	use stress option (off by default)	18
useThSIce		62
useTimeVarBLH	use time varying BL height option (off by default)	8
useZONAL_FILT		15
using_cost_altim		15
using_cost_bp		10
using_cost_scat		10
using_cost_seaice		9
using_cost_sst		15
using_cost_transp		7
using_ers		11
using_gencost		46
using_gfo		11
using_mdt		7
using_topex		4
using_tpj		13
usingCartesianGrid	If TRUE grid generation will be in a cartesian	28
usingCurvilinearGrid	If TRUE, use a curvilinear grid (to be provided)	42
usingCylindricalGrid	If TRUE grid generation will be Cylindrical	22
usingMPI		52
usingSphericalPolarGrid	If TRUE grid generation will be in a	41
ustress_exfremo_intercept		5
ustress_exfremo_slope		5
ustress_interpMethod		13
ustress_lat0		8
ustress_lat_inc		8
ustress_lon0		8
ustress_lon_inc		9
ustress_nlat		10
ustress_nlon		9
ustressconst		5
UStressFile		8
ustressfile		19
ustressperiod		11
ustressRepCycle		7
ustressstartdate1		5
ustressstartdate2		5
ustressStartTime		9
uvel0errfile		8
UvelFile		5
uVelInitFile		15
uwind_errfile		8
uwind_exfremo_intercept		5
uwind_exfremo_slope		5
uwind_interpMethod		11
uwind_lat0		8
uwind_lat_inc		8
uwind_lon0		8
uwind_lon_inc		9
uwind_nlat		10
uwind_nlon		9
uwindconst		5
UWindFile		15
uwindfile		15
uwindperiod		11
uwindRepCycle		7
uwindstartdate1		5
uwindstartdate2		5
uwindStartTime		9
V A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
val_regMask	corresponding mask value of region n in the region-mask	5
vbarfile		11
vdrifterrfile		6
vdriftfile		6
vectorInvariantMomentum	use Vector-Invariant form (mom_vecinv package)	20
vel0errfile		6
velerrfile		6
VERTICAL_VELOCITY		7
VGUST	wind speed for sub-grid-scale gusts	12
vIceFile	File containing initial sea-ice V comp. velocity	8
viscA4	Biharmonic viscosity coeff. for mixing of	15
viscA4D	Biharmonic viscosity coeff. for mixing of momentum laterally	19
viscA4Dfile	File containing 3D specification of horizontal viscosity	9
viscA4Grid	non-dimensional grid-size dependent bi-harmonic viscosity	12
viscA4GridMax	maximum and minimum biharmonic viscosity coefficients ...	9
viscA4GridMin	in terms of non-dimensional grid-size dependent viscosity	8
viscA4Max	Maximum biharmonic viscosity coeff. for mixing of	9
viscA4ReMax	Maximum Gridscale Reynolds number for	6
viscA4W	Biharmonic viscosity coeff. for mixing of vertical	10
viscA4Z	Biharmonic viscosity coeff. for mixing of momentum laterally	17
viscA4Zfile	File containing 3D specification of horizontal viscosity	9
viscAh	Eddy viscosity coeff. for mixing of	13
viscAhD	Eddy viscosity coeff. for mixing of momentum laterally	16
viscAhDfile	File containing 3D specification of horizontal viscosity	9
viscAhGrid	non-dimensional grid-size dependent viscosity	11
viscAhGridMax	maximum and minimum harmonic viscosity coefficients ...	6
viscAhGridMin	in terms of non-dimensional grid-size dependent visc.	6
viscAhMax	Maximum eddy viscosity coeff. for mixing of	9
viscAhReMax	Maximum gridscale Reynolds number for eddy viscosity	6
viscAhW	Eddy viscosity coeff. for mixing of vertical	9
viscAhZ	Eddy viscosity coeff. for mixing of momentum laterally	14
viscAhZfile	File containing 3D specification of horizontal viscosity	9
viscAp	Eddy viscosity coeff. for mixing of momentum vertically ( Pa^2/s )	5
viscAr		11
viscArNr	vertical profile of Eddy viscosity coeff.	37
viscAstrain	replaced by standard viscosity coeff & useStrainTensionVisc	4
viscAtension	replaced by standard viscosity coeff & useStrainTensionVisc	4
viscAz	Eddy viscosity coeff. for mixing of momentum vertically ( m^2/s )	5
viscC2leith	Leith non-dimensional viscosity factor (grad(vort))	10
viscC2leithD	Modified Leith non-dimensional visc. factor (grad(div))	11
viscC2smag	Smagorinsky non-dimensional viscosity factor (harmonic)	9
viscC4leith	Leith non-dimensional viscosity factor (grad(vort))	11
viscC4leithD	Modified Leith non-dimensional viscosity factor (grad(div))	12
viscC4smag	Smagorinsky non-dimensional viscosity factor (biharmonic)	9
viscFacInAd	viscosity factor for adjoint	6
vMxL_default	default value for ocean current velocity in MxL [m/s]	7
vonk		16
Vrelaxobcsbound		12
Vrelaxobcsinner	relaxation time scale (in seconds) on the boundary	12
vstress_exfremo_intercept		5
vstress_exfremo_slope		5
vstress_interpMethod		13
vstress_lat0		8
vstress_lat_inc		8
vstress_lon0		8
vstress_lon_inc		9
vstress_nlat		9
vstress_nlon		9
vstressconst		5
VStressFile		8
vstressfile		19
vstressperiod		11
vstressRepCycle		7
vstressstartdate1		5
vstressstartdate2		5
vstressStartTime		9
vvel0errfile		8
VvelFile		4
vVelInitFile		15
vwind_errfile		8
vwind_exfremo_intercept		5
vwind_exfremo_slope		5
vwind_interpMethod		11
vwind_lat0		8
vwind_lat_inc		8
vwind_lon0		8
vwind_lon_inc		9
vwind_nlat		9
vwind_nlon		9
vwindconst		5
VWindFile		15
vwindfile		15
vwindperiod		11
vwindRepCycle		7
vwindstartdate1		5
vwindstartdate2		5
vwindStartTime		9
W A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
W2_EXCH2_PARM01		2
W2_mapIO	select option for global-IO mapping: old format, put facets 1 after the other in the X dir.; this is not necessary compact . compact format, 1 facet after the other (mostly in Y dir.) but needs to fold some facet (domain) if too large compact format (= 1 long line), one facet after the other.	16
W2_printMsg	select option for information messages printing open and print to w2_tile_topology log file print the minimum, to StdOut no duplicated print from different processes (only Master) all processes do print (used to check).	26
W2_useE2ioLayOut	=T: use Exch2 global-IO Layout; =F: use model default	14
WaveHFile		10
WaveModel		4
WavePFile		10
wbarfile		10
windFile		7
windstressmax		12
wmean_smrarea		4
writeBinaryPrec	Precision used for writing binary files	92
writegrid_mnc	use mnc to write model-grid arrays to file	6
writePickupAtEnd	write pickup at the last timestep	8
writeStatePrec	Precision used for writing model state.	7
wsink0	Initial sinking rate	5
wsink0z	Depth at which sinking rate starts increasing	6
wsinkacc	Acceleration rate of sinking with depth	5
wsmrarea0		5
wspeed_exfremo_intercept		5
wspeed_exfremo_slope		5
wspeed_interpMethod		8
wspeed_lat0		7
wspeed_lat_inc		7
wspeed_lon0		7
wspeed_lon_inc		8
wspeed_nlat		8
wspeed_nlon		8
wspeedconst		5
WSpeedFile		6
wspeedfile		16
wspeedperiod		8
wspeedRepCycle		6
wspeedstartdate1		5
wspeedstartdate2		5
wspeedStartTime		7
WvelFile		4
X A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
xbtfile		8
xgOrigin	Origin of the X-axis (Cartesian Grid) / Longitude of Western most cell face (Lat-Lon grid) (Note: this is an inert parameter but it makes geographical references simple.)	11
xkar	von Karman constant [-]	37
xphaseinit	user input initial phase of year relative to mid winter.	4
xPsi0	grid-point coordinate where Psi == 0	7
xx_apressure_file		22
xx_apressure_remo_intercept		9
xx_apressure_remo_slope		9
xx_apressureperiod		11
xx_apressurestartdate1		8
xx_apressurestartdate2		8
xx_aqh_file		24
xx_aqh_mean_file		7
xx_aqh_remo_intercept		9
xx_aqh_remo_slope		9
xx_aqhperiod		11
xx_aqhstartdate1		8
xx_aqhstartdate2		8
xx_atemp_file		24
xx_atemp_mean_file		7
xx_atemp_remo_intercept		9
xx_atemp_remo_slope		9
xx_atempperiod		11
xx_atempstartdate1		8
xx_atempstartdate2		8
xx_bottomdrag_file		24
xx_depth_file		22
xx_diffkr_file		26
xx_edtaux_file		16
xx_edtauy_file		16
xx_efluxp_file		22
xx_efluxy_file		22
xx_etan_file		28
xx_evap_file		22
xx_evap_remo_intercept		9
xx_evap_remo_slope		9
xx_evapperiod		11
xx_evapstartdate1		8
xx_evapstartdate2		8
xx_gen2d_file		17
xx_gen3d_file		15
xx_genarr2d_bounds		5
xx_genarr2d_file		36
xx_genarr2d_preproc		11
xx_genarr2d_preproc_c		4
xx_genarr2d_preproc_i		8
xx_genarr2d_preproc_r		4
xx_genarr2d_weight		17
xx_genarr3d_bounds		6
xx_genarr3d_file		44
xx_genarr3d_preproc		11
xx_genarr3d_preproc_c		4
xx_genarr3d_preproc_i		8
xx_genarr3d_preproc_r		4
xx_genarr3d_weight		17
xx_gentim2d_bounds		5
xx_gentim2d_cumsum		8
xx_gentim2d_file		76
xx_gentim2d_glosum		8
xx_gentim2d_period		14
xx_gentim2d_preproc		23
xx_gentim2d_preproc_c		7
xx_gentim2d_preproc_i		23
xx_gentim2d_preproc_r		6
xx_gentim2d_startdate1		9
xx_gentim2d_startdate2		8
xx_gentim2d_weight		19
xx_hflux_file		31
xx_hflux_remo_intercept		9
xx_hflux_remo_slope		9
xx_hfluxm_file		22
xx_hfluxperiod		12
xx_hfluxstartdate1		8
xx_hfluxstartdate2		8
xx_kapgm_file		24
xx_kapredi_file		21
xx_lwdown_file		22
xx_lwdown_remo_intercept		9
xx_lwdown_remo_slope		9
xx_lwdownperiod		11
xx_lwdownstartdate1		8
xx_lwdownstartdate2		8
xx_lwflux_file		22
xx_lwflux_remo_intercept		9
xx_lwflux_remo_slope		9
xx_lwfluxperiod		11
xx_lwfluxstartdate1		8
xx_lwfluxstartdate2		8
xx_obcse_file		25
xx_obcseperiod		8
xx_obcsestartdate1		6
xx_obcsestartdate2		6
xx_obcsn_file		25
xx_obcsnperiod		8
xx_obcsnstartdate1		6
xx_obcsnstartdate2		6
xx_obcss_file		25
xx_obcssperiod		8
xx_obcssstartdate1		6
xx_obcssstartdate2		6
xx_obcsw_file		25
xx_obcswperiod		8
xx_obcswstartdate1		6
xx_obcswstartdate2		6
xx_precip_file		24
xx_precip_mean_file		7
xx_precip_remo_intercept		9
xx_precip_remo_slope		9
xx_precipperiod		11
xx_precipstartdate1		8
xx_precipstartdate2		8
xx_runoff_file		20
xx_runoff_remo_intercept		8
xx_runoff_remo_slope		8
xx_runoffperiod		10
xx_runoffstartdate1		8
xx_runoffstartdate2		8
xx_salt_file		28
xx_sflux_file		31
xx_sflux_remo_intercept		9
xx_sflux_remo_slope		9
xx_sfluxperiod		12
xx_sfluxstartdate1		8
xx_sfluxstartdate2		8
xx_shifwflx_file		22
xx_shifwflx_remo_intercept		8
xx_shifwflx_remo_slope		8
xx_shifwflxperiod		9
xx_shifwflxstartdate1		8
xx_shifwflxstartdate2		8
xx_siarea_file		19
xx_siheff_file		19
xx_sihsnow_file		19
xx_snowprecip_file		22
xx_snowprecip_remo_intercept		9
xx_snowprecip_remo_slope		9
xx_snowprecipperiod		11
xx_snowprecipstartdate1		8
xx_snowprecipstartdate2		8
xx_sss_file		27
xx_sss_remo_intercept		7
xx_sss_remo_slope		7
xx_sssperiod		10
xx_sssstartdate1		8
xx_sssstartdate2		8
xx_sst_file		27
xx_sst_remo_intercept		7
xx_sst_remo_slope		7
xx_sstperiod		10
xx_sststartdate1		8
xx_sststartdate2		8
xx_swdown_file		24
xx_swdown_mean_file		7
xx_swdown_remo_intercept		9
xx_swdown_remo_slope		9
xx_swdownperiod		11
xx_swdownstartdate1		8
xx_swdownstartdate2		8
xx_swflux_file		24
xx_swflux_remo_intercept		9
xx_swflux_remo_slope		9
xx_swfluxperiod		11
xx_swfluxstartdate1		8
xx_swfluxstartdate2		8
xx_tauu_file		38
xx_tauu_remo_intercept		10
xx_tauu_remo_slope		10
xx_tauuperiod		13
xx_tauustartdate1		8
xx_tauustartdate2		8
xx_tauv_file		38
xx_tauv_remo_intercept		10
xx_tauv_remo_slope		10
xx_tauvperiod		13
xx_tauvstartdate1		8
xx_tauvstartdate2		8
xx_theta_file		28
xx_tr1_file		22
xx_uvel_file		26
xx_uwind_file		25
xx_uwind_mean_file		7
xx_uwind_remo_intercept		10
xx_uwind_remo_slope		10
xx_uwindperiod		12
xx_uwindstartdate1		8
xx_uwindstartdate2		8
xx_vvel_file		26
xx_vwind_file		25
xx_vwind_mean_file		7
xx_vwind_remo_intercept		10
xx_vwind_remo_slope		10
xx_vwindperiod		12
xx_vwindstartdate1		8
xx_vwindstartdate2		8
Y A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
yadmark		145
yctrlid		23
yctrlpospack		9
yctrlposunpack		9
ygOrigin	Origin of the Y-axis (Cartesian Grid) / Latitude of Southern most face (Lat-Lon grid).	16
yPsi0	grid-point coordinate where Psi == 0	7
Z A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Symbol	Description	Uses
zca	scale depth for CaCO3 remineralization (m)	7
zcrit	Minimum Depth (m) over which biological activity	6
zetam		6
zetas		6
zmax		7
zmin		8
zolmin	minimum stability parameter	7
zonal_filt_cospow	Latitude dependance of the damping function	5
zonal_filt_lat	Moved to package zonal_filt	11
zonal_filt_mode2dx	to specify how to treat the 2.dx mode :	6
zonal_filt_sinpow	zonal mode dependance of the damping function	5
zonal_filt_TrStagg	if using a Stager time-step, filter T,S before	4
zonal_filt_uvStar	filter applied to u*,v* (before SOLVE_FOR_P)	7
zonalWindFile	File containing zonal wind data	16
ZONFILT_PARM01		2
zq		11
zref	reference height [m] for transfer coefficient	31
zt		24
zth	height [m] of near-surface air-temp. & air-humid. input	14
zu		30
zwd	height [m] of near-surface wind-speed input data	7