| Directory | File Name | Description |
| ./eesupp/inc/ | DEF_IN_MAKEFILE.h | |
| ./eesupp/src/ | diff_phase_multiple.F | |
| ./eesupp/src/ | different_multiple.F | |
| ./lsopt/ | dgscale.F | |
| ./lsopt/ | dostore.F | |
| ./model/inc/ | DXC_MACROS.h | |
| ./model/inc/ | DXF_MACROS.h | |
| ./model/inc/ | DXG_MACROS.h | |
| ./model/inc/ | DXV_MACROS.h | |
| ./model/inc/ | DYC_MACROS.h | |
| ./model/inc/ | DYF_MACROS.h | |
| ./model/inc/ | DYG_MACROS.h | |
| ./model/inc/ | DYNVARS.h | |
| ./model/inc/ | DYU_MACROS.h | |
| ./model/src/ | diags_oceanic_surf_flux.F | |
| ./model/src/ | diags_phi_hyd.F | |
| ./model/src/ | diags_phi_rlow.F | |
| ./model/src/ | diags_rho.F | |
| ./model/src/ | do_atmospheric_phys.F | |
| ./model/src/ | do_fields_blocking_exchanges.F | |
| ./model/src/ | do_oceanic_phys.F | |
| ./model/src/ | do_stagger_fields_exchanges.F | |
| ./model/src/ | do_statevars_diags.F | |
| ./model/src/ | do_statevars_tave.F | |
| ./model/src/ | do_the_model_io.F | |
| ./model/src/ | do_write_pickup.F | |
| ./model/src/ | dynamics.F | |
| ./pkg/atm2d/ | DRIVER.h | |
| ./pkg/autodiff/ | damp_adj.F | |
| ./pkg/autodiff/ | dummy_in_dynamics.F | |
| ./pkg/autodiff/ | dummy_in_stepping.F | |
| ./pkg/debug/ | DEBUG_OPTIONS.h | |
| ./pkg/debug/ | debug_call.F | |
| ./pkg/debug/ | debug_cs_corner_uv.F | |
| ./pkg/debug/ | debug_enter.F | |
| ./pkg/debug/ | debug_fld_stats_rl.F | |
| ./pkg/debug/ | debug_fld_stats_rs.F | |
| ./pkg/debug/ | debug_leave.F | |
| ./pkg/debug/ | debug_msg.F | |
| ./pkg/debug/ | debug_stats_rl.F | |
| ./pkg/debug/ | debug_stats_rs.F | |
| ./pkg/diagnostics/ | DIAGNOSTICS.h | |
| ./pkg/diagnostics/ | DIAGNOSTICS_CALC.h | |
| ./pkg/diagnostics/ | DIAGNOSTICS_SIZE.h | |
| ./pkg/diagnostics/ | DIAGSTATS_REGIONS.h | |
| ./pkg/diagnostics/ | DIAG_OPTIONS.h | |
| ./pkg/diagnostics/ | diag_calc_psivel.F | |
| ./pkg/diagnostics/ | diag_cg2d.F | |
| ./pkg/diagnostics/ | diag_vegtile_fill.F | |
| ./pkg/diagnostics/ | diagnostics_addtolist.F | |
| ./pkg/diagnostics/ | diagnostics_calc_phivel.F | |
| ./pkg/diagnostics/ | diagnostics_check.F | |
| ./pkg/diagnostics/ | diagnostics_clear.F | |
| ./pkg/diagnostics/ | diagnostics_fill.F | |
| ./pkg/diagnostics/ | diagnostics_fill_field.F | |
| ./pkg/diagnostics/ | diagnostics_fill_rs.F | |
| ./pkg/diagnostics/ | diagnostics_fill_state.F | |
| ./pkg/diagnostics/ | diagnostics_fract_fill.F | |
| ./pkg/diagnostics/ | diagnostics_ini_io.F | |
| ./pkg/diagnostics/ | diagnostics_init_early.F | |
| ./pkg/diagnostics/ | diagnostics_init_fixed.F | |
| ./pkg/diagnostics/ | diagnostics_init_varia.F | |
| ./pkg/diagnostics/ | diagnostics_interp_p2p.F | |
| ./pkg/diagnostics/ | diagnostics_interp_vert.F | |
| ./pkg/diagnostics/ | diagnostics_is_on.F | |
| ./pkg/diagnostics/ | diagnostics_list_check.F | |
| ./pkg/diagnostics/ | diagnostics_main_init.F | |
| ./pkg/diagnostics/ | diagnostics_mnc_out.F | |
| ./pkg/diagnostics/ | diagnostics_out.F | |
| ./pkg/diagnostics/ | diagnostics_read_pickup.F | |
| ./pkg/diagnostics/ | diagnostics_readparms.F | |
| ./pkg/diagnostics/ | diagnostics_scale_fill.F | |
| ./pkg/diagnostics/ | diagnostics_scale_fill_rs.F | |
| ./pkg/diagnostics/ | diagnostics_set_calc.F | |
| ./pkg/diagnostics/ | diagnostics_set_levels.F | |
| ./pkg/diagnostics/ | diagnostics_set_pointers.F | |
| ./pkg/diagnostics/ | diagnostics_setdiag.F | |
| ./pkg/diagnostics/ | diagnostics_status_error.F | |
| ./pkg/diagnostics/ | diagnostics_sum_levels.F | |
| ./pkg/diagnostics/ | diagnostics_summary.F | |
| ./pkg/diagnostics/ | diagnostics_switch_onoff.F | |
| ./pkg/diagnostics/ | diagnostics_utils.F | |
| ./pkg/diagnostics/ | diagnostics_write.F | |
| ./pkg/diagnostics/ | diagnostics_write_pickup.F | |
| ./pkg/diagnostics/ | diagstats_ascii_out.F | |
| ./pkg/diagnostics/ | diagstats_calc.F | |
| ./pkg/diagnostics/ | diagstats_clear.F | |
| ./pkg/diagnostics/ | diagstats_close_io.F | |
| ./pkg/diagnostics/ | diagstats_fill.F | |
| ./pkg/diagnostics/ | diagstats_global.F | |
| ./pkg/diagnostics/ | diagstats_ini_io.F | |
| ./pkg/diagnostics/ | diagstats_local.F | |
| ./pkg/diagnostics/ | diagstats_mnc_out.F | |
| ./pkg/diagnostics/ | diagstats_others_calc.F | |
| ./pkg/diagnostics/ | diagstats_output.F | |
| ./pkg/diagnostics/ | diagstats_set_pointers.F | |
| ./pkg/diagnostics/ | diagstats_set_regions.F | |
| ./pkg/diagnostics/ | diagstats_setdiag.F | |
| ./pkg/dic/ | DIC_ATMOS.h | |
| ./pkg/dic/ | DIC_COST.h | |
| ./pkg/dic/ | DIC_CTRL.h | |
| ./pkg/dic/ | DIC_LOAD.h | |
| ./pkg/dic/ | DIC_OPTIONS.h | |
| ./pkg/dic/ | DIC_VARS.h | |
| ./pkg/dic/ | dic_ad_check_lev1_dir.h | |
| ./pkg/dic/ | dic_ad_check_lev2_dir.h | |
| ./pkg/dic/ | dic_ad_check_lev3_dir.h | |
| ./pkg/dic/ | dic_ad_check_lev4_dir.h | |
| ./pkg/dic/ | dic_atmos.F | |
| ./pkg/dic/ | dic_biotic_diags.F | |
| ./pkg/dic/ | dic_biotic_forcing.F | |
| ./pkg/dic/ | dic_biotic_init.F | |
| ./pkg/dic/ | dic_cost.F | |
| ./pkg/dic/ | dic_diagnostics_init.F | |
| ./pkg/dic/ | dic_fields_load.F | |
| ./pkg/dic/ | dic_fields_update.F | |
| ./pkg/dic/ | dic_ini_atmos.F | |
| ./pkg/dic/ | dic_ini_forcing.F | |
| ./pkg/dic/ | dic_init_fixed.F | |
| ./pkg/dic/ | dic_init_varia.F | |
| ./pkg/dic/ | dic_mnc_init.F | |
| ./pkg/dic/ | dic_read_co2_pickup.F | |
| ./pkg/dic/ | dic_read_pickup.F | |
| ./pkg/dic/ | dic_readparms.F | |
| ./pkg/dic/ | dic_set_control.F | |
| ./pkg/dic/ | dic_store_fluxco2.F | |
| ./pkg/dic/ | dic_surfforcing.F | |
| ./pkg/dic/ | dic_surfforcing_init.F | |
| ./pkg/dic/ | dic_tr_register.F | |
| ./pkg/dic/ | dic_write_pickup.F | |
| ./pkg/down_slope/ | DWNSLP_OPTIONS.h | |
| ./pkg/down_slope/ | DWNSLP_PARAMS.h | |
| ./pkg/down_slope/ | DWNSLP_SIZE.h | |
| ./pkg/down_slope/ | DWNSLP_VARS.h | |
| ./pkg/down_slope/ | dwnslp_apply.F | |
| ./pkg/down_slope/ | dwnslp_calc_flow.F | |
| ./pkg/down_slope/ | dwnslp_calc_rho.F | |
| ./pkg/down_slope/ | dwnslp_diagnostics_init.F | |
| ./pkg/down_slope/ | dwnslp_init_fixed.F | |
| ./pkg/down_slope/ | dwnslp_init_varia.F | |
| ./pkg/down_slope/ | dwnslp_readparms.F | |
| ./pkg/fizhi/ | do_fizhi.F | |
| ./pkg/gridalt/ | dyn2phys.F | |
| ./pkg/seaice/ | diffus.F | |
| ./pkg/seaice/ | dynsolver.F | |
| ./verification/1D_ocean_ice_column/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/1D_ocean_ice_column/code_ad/ | DIAGNOSTICS_SIZE.h | |
| ./verification/MLAdjust/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/adjustment.cs-32x32x1/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/advect_cs/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/advect_xz/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/aim.5l_cs/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/aim.5l_cs/code/ | DIAG_OPTIONS.h | |
| ./verification/bottom_ctrl_5x5/code_ad/ | dummy_in_hfac.F | |
| ./verification/cfc_example/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/cheapAML_box/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/cpl_aim+ocn/code_ocn/ | DIAGNOSTICS_SIZE.h | |
| ./verification/deep_anelastic/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/dome/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/fizhi-cs-aqualev20/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/fizhi-gridalt-hs/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/fizhi-gridalt-hs/code/ | do_fizhi.F | |
| ./verification/front_relax/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/global_ocean.90x40x15/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/global_ocean.cs32x15/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/global_ocean.cs32x15/code/ | DIAG_OPTIONS.h | |
| ./verification/global_ocean.cs32x15/code_ad/ | DIAGNOSTICS_SIZE.h | |
| ./verification/global_ocean.cs32x15/code_ad/ | DIAG_OPTIONS.h | |
| ./verification/global_with_exf/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/global_with_exf/code_ad/ | DIAGNOSTICS_SIZE.h | |
| ./verification/halfpipe_streamice/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/halfpipe_streamice/code_ad/ | DIAGNOSTICS_SIZE.h | |
| ./verification/halfpipe_streamice/code_oad/ | DIAGNOSTICS_SIZE.h | |
| ./verification/hs94.cs-32x32x5/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/ideal_2D_oce/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/inverted_barometer/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/isomip/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/isomip/code_ad/ | DIAGNOSTICS_SIZE.h | |
| ./verification/lab_sea/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/lab_sea/code_ad/ | DIAGNOSTICS_SIZE.h | |
| ./verification/natl_box/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/offline_exf_seaice/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/offline_exf_seaice/code_ad/ | DIAGNOSTICS_SIZE.h | |
| ./verification/rotating_tank/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/seaice_itd/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/short_surf_wave/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/so_box_biogeo/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/solid-body.cs-32x32x1/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/tutorial_advection_in_gyre/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/tutorial_deep_convection/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/tutorial_dic_adjoffline/code_ad/ | DIC_OPTIONS.h | |
| ./verification/tutorial_global_oce_biogeo/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/tutorial_global_oce_biogeo/code/ | DIAG_OPTIONS.h | |
| ./verification/tutorial_held_suarez_cs/code/ | DIAGNOSTICS_SIZE.h | |
| ./verification/vermix/code/ | DIAGNOSTICS_SIZE.h |