| Directory | File Name | Description |
| ./eesupp/src/ | ini_communication_patterns.F | |
| ./eesupp/src/ | ini_procs.F | |
| ./eesupp/src/ | ini_threading_environment.F | |
| ./lsopt/ | instore.F | |
| ./model/src/ | impldiff.F | |
| ./model/src/ | ini_cartesian_grid.F | |
| ./model/src/ | ini_cg2d.F | |
| ./model/src/ | ini_cg3d.F | |
| ./model/src/ | ini_cori.F | |
| ./model/src/ | ini_curvilinear_grid.F | |
| ./model/src/ | ini_cylinder_grid.F | |
| ./model/src/ | ini_depths.F | |
| ./model/src/ | ini_dynvars.F | |
| ./model/src/ | ini_eos.F | |
| ./model/src/ | ini_ffields.F | |
| ./model/src/ | ini_fields.F | |
| ./model/src/ | ini_forcing.F | |
| ./model/src/ | ini_global_domain.F | |
| ./model/src/ | ini_grid.F | |
| ./model/src/ | ini_linear_phisurf.F | |
| ./model/src/ | ini_local_grid.F | |
| ./model/src/ | ini_masks_etc.F | |
| ./model/src/ | ini_mixing.F | |
| ./model/src/ | ini_mnc_vars.F | |
| ./model/src/ | ini_model_io.F | |
| ./model/src/ | ini_nh_fields.F | |
| ./model/src/ | ini_nh_vars.F | |
| ./model/src/ | ini_nlfs_vars.F | |
| ./model/src/ | ini_p_ground.F | |
| ./model/src/ | ini_parms.F | |
| ./model/src/ | ini_pressure.F | |
| ./model/src/ | ini_psurf.F | |
| ./model/src/ | ini_salt.F | |
| ./model/src/ | ini_sigma_hfac.F | |
| ./model/src/ | ini_spherical_polar_grid.F | |
| ./model/src/ | ini_theta.F | |
| ./model/src/ | ini_vel.F | |
| ./model/src/ | ini_vertical_grid.F | |
| ./model/src/ | initialise_fixed.F | |
| ./model/src/ | initialise_varia.F | |
| ./model/src/ | integr_continuity.F | |
| ./model/src/ | integrate_for_w.F | |
| ./pkg/atm2d/ | init_atm2d.F | |
| ./pkg/atm2d/ | init_sumvars.F | |
| ./pkg/atm2d/ | initialise.F | |
| ./pkg/atm_ocn_coupler/ | initialise.F | |
| ./pkg/dic/ | insol.F | |
| ./pkg/icefront/ | ICEFRONT.h | |
| ./pkg/icefront/ | ICEFRONT_OPTIONS.h | |
| ./pkg/icefront/ | icefront_check.F | |
| ./pkg/icefront/ | icefront_diagnostics_init.F | |
| ./pkg/icefront/ | icefront_init_fixed.F | |
| ./pkg/icefront/ | icefront_init_varia.F | |
| ./pkg/icefront/ | icefront_readparms.F | |
| ./pkg/icefront/ | icefront_tendency_apply.F | |
| ./pkg/icefront/ | icefront_thermodynamics.F | |
| ./pkg/openad/ | inner_do_loop.F | |
| ./verification/advect_cs/code/ | ini_vel.F | |
| ./verification/advect_xy/code/ | ini_salt.F | |
| ./verification/advect_xy/code/ | ini_theta.F | |
| ./verification/advect_xy/code/ | ini_vel.F | |
| ./verification/aim.5l_Equatorial_Channel/code/ | ini_depths.F | |
| ./verification/fizhi-cs-aqualev20/code/ | ini_salt.F | |
| ./verification/hs94.1x64x5/code/ | ini_theta.F | |
| ./verification/hs94.1x64x5/code_ad/ | ini_theta.F | |
| ./verification/hs94.1x64x5/code_oad/ | ini_theta.F | |
| ./verification/hs94.cs-32x32x5/code/ | ini_theta.F | |
| ./verification/solid-body.cs-32x32x1/code/ | ini_psurf.F | |
| ./verification/solid-body.cs-32x32x1/code/ | ini_vel.F | |
| ./verification/tutorial_global_oce_optim/code_ad/ | ini_forcing.F | |
| ./verification/tutorial_global_oce_optim/code_oad/ | ini_forcing.F |