| Directory | File Name | Description |
| ./eesupp/src/ | open_copy_data_file.F | |
| ./lsopt/ | outstore.F | |
| ./optim/ | optim.h | |
| ./optim/ | optim_initmod.F | |
| ./optim/ | optim_main.F | |
| ./optim/ | optim_numbmod.F | |
| ./optim/ | optim_readdata.F | |
| ./optim/ | optim_sub.F | |
| ./optim/ | optim_write_control.F | |
| ./optim/ | optim_writedata.F | |
| ./pkg/atm2d/ | OCNIDS.h | |
| ./pkg/atm2d/ | OCNSIZE.h | |
| ./pkg/atm2d/ | OCNVARS.h | |
| ./pkg/atm_ocn_coupler/ | OCNIDS.h | |
| ./pkg/atm_ocn_coupler/ | OCNVARS.h | |
| ./pkg/atm_ocn_coupler/ | ocn_to_atm_mapxyr8.F | |
| ./pkg/ctrl/ | optim.h | |
| ./pkg/ctrl/ | optim_readparms.F | |
| ./pkg/dic/ | o2_surfforcing.F | |
| ./pkg/fizhi/ | o3-tran3.h | |
| ./pkg/obcs/ | OBCS_FIELDS.h | |
| ./pkg/obcs/ | OBCS_GRID.h | |
| ./pkg/obcs/ | OBCS_OPTIONS.h | |
| ./pkg/obcs/ | OBCS_PARAMS.h | |
| ./pkg/obcs/ | OBCS_PTRACERS.h | |
| ./pkg/obcs/ | OBCS_SEAICE.h | |
| ./pkg/obcs/ | ORLANSKI.h | |
| ./pkg/obcs/ | obcs_ad_check_lev1_dir.h | |
| ./pkg/obcs/ | obcs_ad_check_lev2_dir.h | |
| ./pkg/obcs/ | obcs_ad_check_lev3_dir.h | |
| ./pkg/obcs/ | obcs_ad_check_lev4_dir.h | |
| ./pkg/obcs/ | obcs_add_tides.F | |
| ./pkg/obcs/ | obcs_adjust_uvice.F | |
| ./pkg/obcs/ | obcs_apply_eta.F | |
| ./pkg/obcs/ | obcs_apply_ptracer.F | |
| ./pkg/obcs/ | obcs_apply_r_star.F | |
| ./pkg/obcs/ | obcs_apply_seaice.F | |
| ./pkg/obcs/ | obcs_apply_surf_dr.F | |
| ./pkg/obcs/ | obcs_apply_ts.F | |
| ./pkg/obcs/ | obcs_apply_uv.F | |
| ./pkg/obcs/ | obcs_apply_uvice.F | |
| ./pkg/obcs/ | obcs_apply_w.F | |
| ./pkg/obcs/ | obcs_balance_flow.F | |
| ./pkg/obcs/ | obcs_calc.F | |
| ./pkg/obcs/ | obcs_calc_stevens.F | |
| ./pkg/obcs/ | obcs_check.F | |
| ./pkg/obcs/ | obcs_check_depths.F | |
| ./pkg/obcs/ | obcs_copy_tracer.F | |
| ./pkg/obcs/ | obcs_copy_uv_n.F | |
| ./pkg/obcs/ | obcs_diag_balance.F | |
| ./pkg/obcs/ | obcs_exchanges.F | |
| ./pkg/obcs/ | obcs_exf_load.F | |
| ./pkg/obcs/ | obcs_fields_load.F | |
| ./pkg/obcs/ | obcs_init_fixed.F | |
| ./pkg/obcs/ | obcs_init_variables.F | |
| ./pkg/obcs/ | obcs_mon_stats.F | |
| ./pkg/obcs/ | obcs_monitor.F | |
| ./pkg/obcs/ | obcs_output.F | |
| ./pkg/obcs/ | obcs_prescribe_read.F | |
| ./pkg/obcs/ | obcs_read_pickup.F | |
| ./pkg/obcs/ | obcs_readparms.F | |
| ./pkg/obcs/ | obcs_save_uv_n.F | |
| ./pkg/obcs/ | obcs_seaice_sponge.F | |
| ./pkg/obcs/ | obcs_set_connect.F | |
| ./pkg/obcs/ | obcs_sponge.F | |
| ./pkg/obcs/ | obcs_u1_adv_tracer.F | |
| ./pkg/obcs/ | obcs_write_pickup.F | |
| ./pkg/obcs/ | orlanski_east.F | |
| ./pkg/obcs/ | orlanski_init.F | |
| ./pkg/obcs/ | orlanski_north.F | |
| ./pkg/obcs/ | orlanski_south.F | |
| ./pkg/obcs/ | orlanski_west.F | |
| ./pkg/ocn_compon_interf/ | OCNCPL.h | |
| ./pkg/ocn_compon_interf/ | OCN_CPL_OPTIONS.h | |
| ./pkg/ocn_compon_interf/ | ocn_apply_import.F | |
| ./pkg/ocn_compon_interf/ | ocn_check_cplconfig.F | |
| ./pkg/ocn_compon_interf/ | ocn_cpl_diags.F | |
| ./pkg/ocn_compon_interf/ | ocn_cpl_read_pickup.F | |
| ./pkg/ocn_compon_interf/ | ocn_export_data.F | |
| ./pkg/ocn_compon_interf/ | ocn_export_fields.F | |
| ./pkg/ocn_compon_interf/ | ocn_export_ocnconfig.F | |
| ./pkg/ocn_compon_interf/ | ocn_import_atmconfig.F | |
| ./pkg/ocn_compon_interf/ | ocn_import_fields.F | |
| ./pkg/ocn_compon_interf/ | ocn_store_my_data.F | |
| ./pkg/offline/ | OFFLINE.h | |
| ./pkg/offline/ | OFFLINE_OPTIONS.h | |
| ./pkg/offline/ | OFFLINE_SWITCH.h | |
| ./pkg/offline/ | offline_ad_check_lev1_dir.h | |
| ./pkg/offline/ | offline_ad_check_lev2_dir.h | |
| ./pkg/offline/ | offline_ad_check_lev3_dir.h | |
| ./pkg/offline/ | offline_ad_check_lev4_dir.h | |
| ./pkg/offline/ | offline_check.F | |
| ./pkg/offline/ | offline_fields_load.F | |
| ./pkg/offline/ | offline_get_diffus.F | |
| ./pkg/offline/ | offline_init_varia.F | |
| ./pkg/offline/ | offline_readparms.F | |
| ./pkg/offline/ | offline_reset_parms.F | |
| ./pkg/openad/ | OPENAD_OPTIONS.h | |
| ./pkg/openad/ | openad_checkpointInit.F | |
| ./pkg/openad/ | openad_dumpAdjoint.F | |
| ./pkg/opps/ | OPPS.h | |
| ./pkg/opps/ | OPPS_OPTIONS.h | |
| ./pkg/opps/ | OPPS_TAVE.h | |
| ./pkg/opps/ | opps_calc.F | |
| ./pkg/opps/ | opps_check.F | |
| ./pkg/opps/ | opps_init.F | |
| ./pkg/opps/ | opps_interface.F | |
| ./pkg/opps/ | opps_output.F | |
| ./pkg/opps/ | opps_readparms.F | |
| ./pkg/seaice/ | ostres.F | |
| ./verification/OpenAD/code_oad/ | OPENAD_OPTIONS.h | |
| ./verification/cpl_aim+ocn/code_cpl/ | OCNSIZE.h | |
| ./verification/cpl_aim+ocn/shared_code/ | OCNIDS.h | |
| ./verification/cpl_atm2d+ocn/code_atmice/ | OCNSIZE.h | |
| ./verification/cpl_atm2d+ocn/shared_code/ | OCNIDS.h | |
| ./verification/dome/code/ | obcs_calc.F | |
| ./verification/exp4/code/ | OBCS_OPTIONS.h | |
| ./verification/global_ocean.90x40x15/code_oad/ | OPENAD_OPTIONS.h | |
| ./verification/halfpipe_streamice/code_oad/ | OPENAD_OPTIONS.h | |
| ./verification/hs94.1x64x5/code_oad/ | OPENAD_OPTIONS.h | |
| ./verification/internal_wave/code/ | obcs_calc.F | |
| ./verification/isomip/code_oad/ | OPENAD_OPTIONS.h | |
| ./verification/obcs_ctrl/code_ad/ | OBCS_OPTIONS.h | |
| ./verification/seaice_obcs/code/ | OBCS_OPTIONS.h | |
| ./verification/tutorial_global_oce_biogeo/code_oad/ | OPENAD_OPTIONS.h | |
| ./verification/tutorial_plume_on_slope/code/ | OBCS_OPTIONS.h | |
| ./verification/tutorial_tracer_adjsens/code_oad/ | OPENAD_OPTIONS.h |