Alphabetical list of page titles

• A more complicated example (3.20.5 )
• A Rotating Tank in Cylindrical Coordinates (3.21 )
• About this document ...
• Adams-Bashforth III (9.1.1 )
• Adjoint (1.3.9 )
• Adjoint code generation using OpenAD (5.5 )
• Adjoint dump & restart - divided adjoint (DIVA) (5.4 )
• Advection and tracer transport (3.11.1 )
• Advection of momentum (2.14.1 )
• Annotated call tree for MITgcm and WRAPPER (4.4.1 )
• Appendix ATMOSPHERE (1.4 )
• Appendix OCEAN (1.5 )
• Appendix:OPERATORS (1.6 )
• Atmosphere (1.3.2 )
• Atmosphere Packages (6.5 )
• Atmospheric Intermediate Physics: AIM (6.5.1 )
• Automated testing (3.7.2 )
• Automatic Differentiation (5. )
• Baroclinic Gyre MITgcm Example (3.10 )
• Barotropic Gyre MITgcm Example (3.9 )
• Binary input data (3.16.2 )
• Biogeochemistry Packages (6.8 )
• Biogeochemistry Tutorial (3.17 )
• Boundary forced internal waves (1.2.5 )
• Build and run the model (3.16.5 )
• Building MITgcm (3.4 )
• Building MITgcm adjoint with OpenAD (5.5.3 )
• Building the AD code using TAF (5.2.2 )
• Building with MPI (3.4.3 )
• Building/compiling the code elsewhere (3.4.1 )
• BULK_FORCE: Bulk Formula Package (6.4.6 )
• C grid staggering of variables (2.11.2 )
• CAL: The calendar package (6.4.8 )
• Centered fourth order advection (2.17.3 )
• Centered second order advection-diffusion (2.17.1 )
• Code and Parameters files for this tutorial (3.11.5 )
• Code Configuration (3.10.4 )
• Code configuration (3.16.3 )
• Code configuration (3.17.3 )
• Code Configuration (3.18.3 )
• Code configuration (3.19.2 )
• Code Configuration (3.20.3 )
• Code Configuration (3.21.4 )
• Code Configuration (3.9.3 )
• Code configuration (5.3.2 )
• Code description (5.3.1 )
• Communication mechanisms (4.2.5 )
• Communication primitives (4.2.8 )
• Comparison of advection schemes (2.19 )
• Comparison of different advection schemes (3.11.4 )
• Compile Options (8.1.5 )
• Compiling (3.18.4 )
• Compiling the model and its adjoint (3.19.3 )
• Configuration (3.16.1 )
• Continuity and horizontal pressure gradient terms (2.12 )
• Continuous equations in `r' coordinates (1.3 )
• Controlling communication (4.3.3 )
• Convection and mixing over topography (1.2.4 )
• Coordinate systems (1.6.1 )
• Coriolis terms (2.14.2 )
• Coriolis terms (2.15.3 )
• Coupler for mapping between Atmosphere and ocean (6.7.2 )
• Coupling interface for Atmospheric Intermediate code (6.7.1 )
• Crank-Nicolson barotropic time stepping (2.10.1 )
• CTRL: Model Parameter Adjustment Capability (8.3 )
• Curvature metric terms (2.14.3 )
• Custom Cost Functions (8.1.3 )
• Customizing MITgcm (3.6 )
• Derivation of discrete energy conservation (2.14.7 )
• Diagnostics and I/O - Packages II, and Post-Processing Utilities (7. )
• Diagnostics Reference (7.1.6 )
• Diagnostics-A Flexible Infrastructure (7.1 )
• DIC Package (6.8.2 )
• Directory structure of model examples (3.8.2 )
• Discrete Numerical Configuration (3.10.3 )
• Discrete Numerical Configuration (3.12.2 )
• Discrete Numerical Configuration (3.13.2 )
• Discrete numerical configuration (3.15.3 )
• Discrete Numerical Configuration (3.21.3 )
• Discrete Numerical Configuration (3.9.2 )
• Discretization and Algorithm (2. )
• Distributed memory communication (4.2.7 )
• Dos and Donts (7.1.5 )
• Downloading and installing OpenAD (5.5.2 )
• ECCO: model-data comparisons using gridded data sets (8.1 )
• Eddy Viscosity (2.21.1 )
• Equations (7.1.2 )
• Equations (7.7.2 )
• Equations of motion for the ocean (1.5.1 )
• Equations solved (3.10.2 )
• Equations solved (3.15.2 )
• Equations Solved (3.17.2 )
• Equations Solved (3.21.2 )
• Equations Solved (3.9.1 )
• Estimating Resource Requirements (4.4.3 )
• Example Grids (7.5.2 )
• exch2: Extended Cubed Sphere Topology (6.2.4 )
• EXF: The external forcing package (6.4.7 )
• Experiment Configuration (3.12.3 )
• Experiment Configuration (3.13.3 )
• Experiment Configuration (3.14.4 )
• Experiment configuration (3.15.5 )
• Explicit time-stepping: Adams-Bashforth (2.5 )
• FFT Filtering Code (6.2.3 )
• Finding the pressure field (1.3.6 )
• First order upwind advection (2.17.4 )
• Fizhi: High-end Atmospheric Physics (6.5.3 )
• Flux-form momentum equations (2.14 )
• Forcing (3.14.2 )
• Forcing/dissipation (1.3.7 )
• Fortran Native I/O: MDSIO and RW (7.3 )
• Forward or direct sensitivity (5.1.1 )
• Full list of model examples (3.8.1 )
• GCHEM Package (6.8.1 )
• General features (8.5.1 )
• General purpose numerical infrastructure packages (6.3 )
• General setup (5.2.1 )
• Generic Advection/Diffusion (6.2.1 )
• Generic Cost Function (8.1.1 )
• Generic Integral Function (8.1.2 )
• Getting Started with MITgcm (3. )
• GGL90: a TKE vertical mixing scheme (6.4.3 )
• Global atmosphere: `Held-Suarez' benchmark (1.2.1 )
• Global ocean circulation (1.2.3 )
• Global Ocean MITgcm Example (3.12 )
• Global Ocean State Estimation Example (3.18 )
• Global state estimation of the ocean (1.2.7 )
• GMREDI: Gent-McWilliams/Redi SGS Eddy Parameterization (6.4.1 )
• Gradient of Bernoulli function (2.15.5 )
• Gravity Plume On a Continental Slope (3.16 )
• Grid Generation (7.5 )
• Grid initialization and data (2.11.3 )
• Gridalt - Alternate Grid Package (6.2.5 )
• Gyre Advection Example (3.11 )
• Held-Suarez Atmosphere MITgcm Example (3.14 )
• Horizontal dissipation (2.15.7 )
• Horizontal divergence (2.15.6 )
• Horizontal grid (2.11.4 )
• Hydrostatic balance (2.13 )
• Hydrostatic Primitive Equations for the Atmosphere in pressurecoordinates (1.4.1 )
• Hydrostatic, Quasi-hydrostatic, Quasi-nonhydrostatic andNon-hydrostatic forms (1.3.4 )
• Illustrations of the model in action (1.2 )
• Implementation of the control variable and the cost function (3.18.2 )
• Implicit time-stepping: backward method (2.6 )
• Introducing a tracer into the flow (3.11.2 )
• Introduction (1.1 )
• Introduction (5.4.1 )
• Introduction (5.5.1 )
• Introduction (7.1.1 )
• Introduction (7.4.1 )
• Introduction (7.7.1 )
• Key routines (7.7.3 )
• Key Routines (8.1.4 )
• Key Subroutines and Parameters (7.1.3 )
• Kinematic Boundary conditions (1.3.1 )
• Kinetic energy (2.15.2 )
• KL10: Vertical Mixing Due to Breaking Internal Waves (6.4.5 )
• KPP: Nonlocal K-Profile Parameterization for Vertical Mixing (6.4.2 )
• Land package (6.5.2 )
• Lateral dissipation (2.14.5 )
• Linear advection schemes (2.17 )
• Looking at the output (3.5.2 )
• Machine model parallelism (4.2.4 )
• MDSIO (7.3.1 )
• Measuring and Characterizing Performance (4.4.2 )
• Memory architecture (4.2.9 )
• Mercator, Nondimensional Equations (2.21.2 )
• Method 1 - Checkout from CVS (3.2.1 )
• Method 2 - Tar file download (3.2.2 )
• MITgcm Example Experiments (3.8 )
• MITgcm execution under WRAPPER (4.4 )
• MITGCM USER MANUAL
• MITGCM USER MANUAL
• MNC Internals (7.2.3 )
• MNC Troubleshooting (7.2.2 )
• Model and directory structure (3.3 )
• Model parameters (3.16.4 )
• Mom Diagnostics (2.14.8 )
• Monitor: Simulation state monitoring toolkit (7.4 )
• Multi-dimensional advection (2.18.4 )
• NetCDF I/O: MNC (7.2 )
• Non-hydrostatic formulation (2.9 )
• Non-hydrostatic metric terms (2.14.4 )
• Non-linear advection schemes (2.18 )
• Non-linear free-surface (2.10.2 )
• Nonlinear Viscosities for Large Eddy Simulation (2.21 )
• Notation (2.1 )
• Notes on the flux form of the PV equation and vertical PV fluxes (7.7.5 )
• Number of iterations vs. number of simulations (8.5.3 )
• Numerical stability criteria and other considerations (3.15.4 )
• OBCS: Open boundary conditions for regional modeling (6.3.1 )
• Obtaining the code (3.2 )
• Ocean (1.3.3 )
• Ocean biogeochemical cycles (1.2.8 )
• Ocean gyres (1.2.2 )
• Ocean Packages (6.4 )
• Ocean State Estimation Packages (8. )
• Offline Example (3.20 )
• OPPS: Ocean Penetrative Plume Scheme (6.4.4 )
• Other Time-stepping Options (9.1 )
• Output files (3.5.1 )
• Overall architectural goals (4.1 )
• Overview (3.10.1 )
• Overview (3.12.1 )
• Overview (3.13.1 )
• Overview (3.14.1 )
• Overview (3.15.1 )
• Overview (3.17.1 )
• Overview (3.18.1 )
• Overview (3.20.1 )
• Overview (3.21.1 )
• Overview of MITgcm (1. )
• Overview of the experiment (3.19.1 )
• P coordinate Global Ocean MITgcm Example (3.13 )
• Package Activation (6.1.2 )
• Package Coding Standards (6.1.3 )
• Package Inclusion/Exclusion (6.1.1 )
• Packages Related to Coupled Model (6.7 )
• Packages Related to Hydrodynamical Kernel (6.2 )
• Parameter sensitivity using the adjoint of MITgcm (1.2.6 )
• Parameters: Computational domain, geometry and time-discretization (3.6.1 )
• Parameters: Equation of state (3.6.2 )
• Parameters: Momentum equations (3.6.3 )
• Parameters: Simulation controls (3.6.5 )
• Parameters: Tracer equations (3.6.4 )
• Physical Parameterizations - Packages I (6. )
• Potential vorticity Matlab Toolbox (7.7 )
• Pre- and Post-Processing Scripts and Utilities (7.6 )
• Pre-processing software (7.6.2 )
• Pressure method with implicit linear free-surface (2.4 )
• Pressure method with rigid-lid (2.3 )
• Previous Applications of MITgcm (10. )
• PROFILES: model-data comparisons at observed locations (8.2 )
• PTRACERS Package (6.3.3 )
• RBCS Package (6.3.2 )
• Recipe 1: single processor (5.4.2 )
• Recipe 2: multi processor (MPI) (5.4.3 )
• Relative vorticity (2.15.1 )
• Reverse or adjoint sensitivity (5.1.2 )
• Running MITgcm (3.5 )
• Running the estimation (3.18.5 )
• Running The Example (3.10.5 )
• Running the example (3.15.6 )
• Running the example (3.17.4 )
• Running The Example (3.20.4 )
• RW Basic binary I/O utilities (7.3.2 )
• Sea Ice Packages (6.6 )
• SEAICE Package (6.6.2 )
• Second order flux limiters (2.18.1 )
• Selecting an advection scheme (3.11.3 )
• Sensitivity of Air-Sea Exchange to Tracer Injection Site (3.19 )
• Set-up description (3.14.3 )
• SHAP Diagnostics (2.20.1 )
• Shapiro Filter (2.20 )
• Shapiro Filter (6.2.2 )
• Shared memory communication (4.2.6 )
• Shear terms (2.15.4 )
• SHELFICE Package (6.6.3 )
• Simulations of laboratory experiments (1.2.9 )
• SMOOTH: Smoothing And Covariance Model (8.4 )
• Software Architecture (4. )
• Solution strategy (1.3.5 )
• Some basic algebra (5.1 )
• Spatial discretization of the dynamical equations (2.11 )
• Specifying a domain decomposition (4.3.1 )
• Staggered baroclinic time-stepping (2.8 )
• Starting the code (4.3.2 )
• Storing vs. recomputation in reverse mode (5.1.3 )
• STREAMICE Package (6.6.4 )
• Summary (4.2.10 )
• Supporting hardware neutrality (4.2.2 )
• Surface Driven Convection (3.15 )
• Synchronous time-stepping: variables co-located in time (2.7 )
• Target hardware (4.2.1 )
• Technical details (7.7.4 )
• Testing (3.7 )
• The AD build process in detail (5.2.3 )
• The control variables (independent variables) (5.2.5 )
• The cost function (dependent variable) (5.2.4 )
• The finite volume method: finite volumes versus finite difference (2.11.1 )
• The gradient check package (5.3 )
• The line search optimisation algorithm (8.5 )
• The online vs. offline version (8.5.2 )
• Third order direct space time (2.18.2 )
• Third order direct space time with flux limiting (2.18.3 )
• Third order upwind bias advection (2.17.2 )
• THSICE: The Thermodynamic Sea Ice Package (6.6.1 )
• Time-extrapolation of tracer (rather than tendency) (9.1.2 )
• Time-stepping (2.2 )
• Time-stepping of tracers (3.20.2 )
• Time-stepping of tracers: ABII (2.16.1 )
• TLM and ADM generation in general (5.2 )
• Toolkit for building couplers (6.7.3 )
• Topography: partially filled cells (2.11.6 )
• Tracer equations (2.16 )
• Under development (9. )
• Usage Notes (7.1.4 )
• Using genmake2 (3.4.2 )
• Using MITgcm Packages (6.1 )
• Using MNC (7.2.1 )
• Using Monitor (7.4.2 )
• Using SPGrid (7.5.1 )
• Using testreport (3.7.1 )
• Using the WRAPPER (4.3 )
• Utilities supplied with the model (7.6.1 )
• Variants on the Free Surface (2.10 )
• Vector invariant form (1.3.8 )
• Vector invariant momentum equations (2.15 )
• Vertical dissipation (2.14.6 )
• Vertical dissipation (2.15.8 )
• Vertical grid (2.11.5 )
• Where to find information (3.1 )
• WRAPPER (4.2 )
• WRAPPER machine model (4.2.3 )

Copyright © 2006 Massachusetts Institute of Technology

Last update 2018-01-23